RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1092581" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1092581 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9125742 9125742 PRJNA1092581_P_NODE_88448_length_272_cov_3.773869_g87915_i0 PRJNA1092581 88448 272 3.773869 10.26492368 Zelonia costaricensis 372075 Euglenozoa other_Eukaryota 368 2.18e-97   NTclustered gi|1002342154|gb|KT944304.1| 372075 g87915 i0 92.941 123.213235294118 255 14 92 3 22 272 1471 1725 Zelonia costaricensis strain 15EC 28S ribosomal RNA gene, partial sequence blastn 33514 368 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Zelonia Zelonia costaricensis
16772546 16772546 PRJNA1092581_P_NODE_100634_length_252_cov_1.899441_g100101_i0 PRJNA1092581 100634 252 1.899441 4.78659132 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 145 3.66e-30   NTclustered gi|2787706973|ref|XM_067331715.1| 715481 g100101 i0 100 36.5079365079365 78 0 31 0 173 250 119 42 Trypanosoma melophagium uncharacterized protein (LSM04_008922), partial mRNA blastn 9200 145 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
16775177 16775177 PRJNA1092581_P_NODE_89234_length_271_cov_1.641414_g88701_i0 PRJNA1092581 89234 271 1.641414 4.44823194 Leishmania infantum 5671 Euglenozoa other_Eukaryota 158 5.12e-34   NTclustered gi|146093607|ref|XM_001466878.1| 435258 g88701 i0 88.55 23.9963099630996 131 13 48 2 138 267 130 1 Leishmania infantum JPCM5 putative 40S ribosomal protein S30 partial mRNA blastn 6503 158 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania infantum
20144144 20144144 PRJNA1092581_P_NODE_106676_length_244_cov_3.596491_g106143_i0 PRJNA1092581 106676 244 3.596491 8.77543804 Trypanosoma 5690 Euglenozoa other_Eukaryota 239 1.57e-58   NTclustered gi|2026667531|dbj|LC618031.1| 67003 g106143 i0 98.519 70.483606557377 135 2 55 0 22 156 5149 5283 Trypanosoma theileri OSK-16 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, partial and complete sequence blastn 17198 239 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
21419747 21419747 PRJNA1092581_P_NODE_103217_length_248_cov_7.308571_g102684_i0 PRJNA1092581 103217 248 7.308571 18.12525608 Parabodo 140243 Euglenozoa other_Eukaryota 394 3.24e-105   NTclustered gi|45739057|gb|AY490215.1| 351713 g102684 i0 100 85.8306451612903 213 0 86 0 22 234 1524 1736 Bodo caudatus 18S ribosomal RNA gene, partial sequence blastn 21286 394 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Parabodo Parabodo caudatus
21419901 21419901 PRJNA1092581_P_NODE_120057_length_222_cov_4.228188_g119524_i0 PRJNA1092581 120057 222 4.228188 9.38657736 Leishmania 5658 Euglenozoa other_Eukaryota 82.4 2.51e-11   NTclustered gi|2785806723|ref|XM_067204375.1| 2249476 g119524 i0 85.057 15.3873873873874 87 5 37 8 120 202 653 571 Leishmania orientalis uncharacterized protein (LSCM4_02343), partial mRNA blastn 3416 82.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania orientalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;