RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1092581" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1092581 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1470541 1470541 PRJNA1092581_P_NODE_119782_length_222_cov_72.174497_g119249_i0 PRJNA1092581 119782 222 72.174497 160.22738334 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 183 6.689999999999998e-42   NTclustered gi|1752360029|ref|XM_786031.4| 7668 g119249 i0 98.095 1.9009009009009 105 2 47 0 22 126 1135 1239 PREDICTED: Strongylocentrotus purpuratus mitochondrial Rho GTPase 1-A (LOC586242), transcript variant X2, mRNA blastn 422 183 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
9125790 9125790 PRJNA1092581_P_NODE_90428_length_268_cov_65.784615_g89895_i0 PRJNA1092581 90428 268 65.784615 176.3027682 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 104 6.68e-18   NTclustered gi|1752373223|ref|XM_030990498.1| 7668 g89895 i0 89.286 0.313432835820896 84 8 31 1 118 200 1380 1463 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC105447475 (LOC105447475), mRNA blastn 84 104 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
24422866 24422866 PRJNA1092581_P_NODE_45100_length_403_cov_10.915152_g44567_i0 PRJNA1092581 45100 403 10.915152 43.98806256 Asterias rubens 7604 Echinodermata other_Eukaryota 78.7 6.38e-10   NTclustered gi|1834259634|ref|XR_004519136.1| 7604 g44567 i0 83.529 0.210918114143921 85 13 21 1 53 136 147 231 PREDICTED: Asterias rubens uncharacterized LOC117291183 (LOC117291183), ncRNA blastn 85 78.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
25244823 25244823 PRJNA1092581_P_NODE_58580_length_347_cov_3.405109_g58047_i0 PRJNA1092581 58580 347 3.405109 11.81572823 Echinoidea 7625 Echinodermata other_Eukaryota 172 2.42e-38   NTclustered gi|1240051417|dbj|LC187283.1| 7650 g58047 i0 85.119 17.6657060518732 168 25 48 0 132 299 248 81 Hemicentrotus pulcherrimus mRNA for calmodulin, complete cds blastn 6130 172 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Hemicentrotus Hemicentrotus pulcherrimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;