RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1092581" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1092581 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5300415 5300415 PRJNA1092581_P_NODE_67625_length_319_cov_4.195122_g67092_i0 PRJNA1092581 67625 319 4.195122 13.38243918 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 270 7.579999999999999e-68   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g67092 i0 85.211 87.9843260188088 284 18 82 11 10 271 3251922 3251641 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 28067 270 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
8672097 8672097 PRJNA1092581_P_NODE_92847_length_264_cov_4.565445_g92314_i0 PRJNA1092581 92847 264 4.565445 12.0527748 Pseudobdellovibrio 2862745 Bacteria Bacteria 257 4.7600000000000006e-64   NTclustered gi|507148233|ref|NR_103040.1| 453816 g92314 i0 85.542 10.1856060606061 249 33 94 3 18 264 238 485 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 2689 257 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
9946923 9946923 PRJNA1092581_P_NODE_84348_length_280_cov_3.024155_g83815_i0 PRJNA1092581 84348 280 3.024155 8.467634 Bacteriovorax 146784 Bacteria Bacteria 448 2.8199999999999998e-121   NTclustered gi|34604519|gb|AY294222.1| 242936 g83815 i0 98.054 85.2678571428571 257 5 92 0 20 276 141 397 Bacteriovorax sp. EPC3 16S ribosomal RNA gene, partial sequence blastn 23875 448 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. EPC3
11676139 11676139 PRJNA1092581_P_NODE_65490_length_325_cov_4.400794_g64957_i0 PRJNA1092581 65490 325 4.400794 14.3025805 Bdellovibrio sp. HCB209 3394354 Bacteria Bacteria 122 2.2899999999999998e-23   NTclustered gi|2895998570|gb|CP178618.1| 3394354 g64957 i0 94.872 1.50769230769231 78 4 24 0 218 295 1523023 1523100 Bdellovibrio sp. HCB209 chromosome, complete genome blastn 490 122 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB209
16773113 16773113 PRJNA1092581_P_NODE_126454_length_202_cov_6.837209_g125921_i0 PRJNA1092581 126454 202 6.837209 13.81116218 Spirobacillus cienkowskii 495820 Bacteria Bacteria 128 2.8399999999999998e-25   NTclustered gi|2696024138|gb|CP146516.1| 495820 g125921 i0 80.588 242.341584158416 170 29 83 4 21 188 384713 384880 Spirobacillus cienkowskii strain FI-SP1 chromosome, complete genome blastn 48953 128 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales   Spirobacillus Spirobacillus cienkowskii
16775121 16775121 PRJNA1092581_P_NODE_86774_length_275_cov_4.039604_g86241_i0 PRJNA1092581 86774 275 4.039604 11.108911 Bacteriovorax stolpii 960 Bacteria Bacteria 468 2.12e-127   NTclustered gi|1700689994|gb|CP030035.1| 960 g86241 i0 99.609 2.79272727272727 256 1 93 0 1 256 321983 321728 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 768 468 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
23148155 23148155 PRJNA1092581_P_NODE_120099_length_221_cov_68.864865_g119566_i0 PRJNA1092581 120099 221 68.864865 152.19135165 Bdellovibrio sp. NC01 2220073 Bacteria Bacteria 307 3.79e-79   NTclustered gi|1700686220|gb|CP030034.1| 2220073 g119566 i0 94.5 76.6199095022624 200 9 90 2 22 220 861424 861622 Bdellovibrio sp. NC01 chromosome, complete genome blastn 16933 307 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. NC01

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;