RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1092581" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1092581 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13771272 13771272 PRJNA1092581_P_NODE_119331_length_224_cov_4.635762_g118798_i0 PRJNA1092581 119331 224 4.635762 10.38410688 Armatimonadota 67819 Bacteria Bacteria 206 1.44e-48   NTclustered gi|1996217993|dbj|AP021858.1| 2608984 g118798 i0 85.507 8.83035714285714 207 19 90 9 21 221 36800 36599 Candidatus Nitrosymbiomonas proteolyticus DNA, complete genome blastn 1978 206 1 Bacteria   Bacillati Armatimonadota       Candidatus Nitrosymbiomonas Candidatus Nitrosymbiomonas proteolyticus
16320370 16320370 PRJNA1092581_P_NODE_114233_length_233_cov_3.125000_g113700_i0 PRJNA1092581 114233 233 3.125 7.28125 Chthonomonas 1077265 Bacteria Bacteria 108 4.39e-19   NTclustered gi|510021827|emb|HF951689.1| 1303518 g113700 i0 98.361 56.137339055794 61 1 26 0 153 213 157291 157231 Chthonomonas calidirosea T49 complete genome blastn 13080 108 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;