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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJNA1092581" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 31 ✖

bioproject 1

  • PRJNA1092581 · 31 ✖

analysis 1

  • blastn · 31 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
197568 197568 PRJNA1092581_P_NODE_67661_length_319_cov_3.495935_g67128_i0 PRJNA1092581 67661 319 3.495935 11.15203265 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 207 6.03e-49   NTclustered gi|470434031|ref|XM_004338593.1| 1257118 g67128 i0 86.957 1.09090909090909 184 24 58 0 126 309 831 648 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_088730), partial mRNA blastn 348 207 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
197584 197584 PRJNA1092581_P_NODE_68201_length_317_cov_10.840164_g67668_i0 PRJNA1092581 68201 317 10.840164 34.36331988 Heterostelium album 2086695 Evosea other_Eukaryota 141 6.16e-29   NTclustered gi|1160553880|ref|XM_020572765.1| 670386 g67668 i0 85.714 3.68769716088328 133 19 42 0 21 153 143 275 Polysphondylium pallidum PN500 cytochrome c (cytC), partial mRNA blastn 1169 141 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
198208 198208 PRJNA1092581_P_NODE_93521_length_263_cov_3.663158_g92988_i0 PRJNA1092581 93521 263 3.663158 9.63410554 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 431 2.639999999999999e-116   NTclustered gi|330902855|gb|JF298253.1| 1017091 g92988 i0 98.76 85.1901140684411 242 3 92 0 22 263 1193 1434 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 22405 431 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
1470790 1470790 PRJNA1092581_P_NODE_15982_length_692_cov_8.567044_g15481_i0 PRJNA1092581 15982 692 8.567044 59.28394448 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 499 2.0499999999999994e-136   NTclustered gi|470407635|ref|XM_004336008.1| 1257118 g15481 i0 91.46 0.524566473988439 363 31 52 0 306 668 591 229 Acanthamoeba castellanii str. Neff Ras subfamily protein (ACA1_366550), partial mRNA blastn 363 499 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1471133 1471133 PRJNA1092581_P_NODE_27402_length_531_cov_4.886463_g26870_i0 PRJNA1092581 27402 531 4.886463 25.94711853 Stemonitopsis subcaespitosa 1048528 Evosea other_Eukaryota 510 7.1499999999999995e-140   NTclustered gi|426281760|gb|JX681133.1| 1048528 g26870 i0 88.889 77.7645951035782 414 46 78 0 118 531 6 419 Stemonitopsis subcaespitosa actin gene, partial cds blastn 41293 510 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonitopsis Stemonitopsis subcaespitosa
4024645 4024645 PRJNA1092581_P_NODE_84884_length_279_cov_2.514563_g84351_i0 PRJNA1092581 84884 279 2.514563 7.01563077 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 427 3.65e-115   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g84351 i0 96.512 1.31899641577061 258 9 92 0 2 259 627 370 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 368 427 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4024833 4024833 PRJNA1092581_P_NODE_92564_length_265_cov_1.802083_g92031_i0 PRJNA1092581 92564 265 1.802083 4.77551995 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 263 1.03e-65   NTclustered gi|470510973|ref|XM_004351548.1| 1257118 g92031 i0 86.809 0.886792452830189 235 31 89 0 3 237 894 1128 Acanthamoeba castellanii str. Neff cation-transporting atpase 13a1 (g-box binding protein) family protein (ACA1_395980), partial mRNA blastn 235 263 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5300313 5300313 PRJNA1092581_P_NODE_63885_length_330_cov_3.019455_g63352_i0 PRJNA1092581 63885 330 3.0194549999999998 9.9642015 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 91.6 6.58e-14   NTclustered gi|470448619|ref|XM_004340130.1| 1257118 g63352 i0 92.188 0.193939393939394 64 5 19 0 210 273 2271 2208 Acanthamoeba castellanii str. Neff glycosyl hydrolase family 65 central catalytic domain containing protein (ACA1_368900), partial mRNA blastn 64 91.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6121759 6121759 PRJNA1092581_P_NODE_72485_length_306_cov_8.845494_g71952_i0 PRJNA1092581 72485 306 8.845494 27.06721164 root 1 Root_unresolved Root_unresolved 224 5.709999999999999e-54   NTclustered gi|292559443|ref|NC_013986.1| 5778 g71952 i0 84.416 78.3660130718954 231 33 75 2 70 298 27223 27452 Hartmannella vermiformis mitochondrion, complete genome blastn 23980 224 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7850517 7850517 PRJNA1092581_P_NODE_78407_length_292_cov_19.059361_g77874_i0 PRJNA1092581 78407 292 19.059361 55.65333412 Cavenderia fasciculata 261658 Evosea other_Eukaryota 78.7 4.47e-10   NTclustered gi|470236133|ref|XM_004349965.1| 261658 g77874 i0 86.111 0.246575342465753 72 10 25 0 6 77 888 959 Cavenderia fasciculata G beta like protein (gpbB), partial mRNA blastn 72 78.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
9946422 9946422 PRJNA1092581_P_NODE_36168_length_457_cov_5.781250_g35636_i0 PRJNA1092581 36168 457 5.78125 26.4203125 Cochliopodium 313557 Discosea other_Eukaryota 845 0   NTclustered gi|659103902|gb|KJ569713.1| 313997 g35636 i0 100 58.2691466083151 457 0 100 0 1 457 583 1039 Cochliopodium minus clone 1101 18S ribosomal RNA gene, partial sequence blastn 26629 845 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
10399323 10399323 PRJNA1092581_P_NODE_123969_length_210_cov_4.868613_g123436_i0 PRJNA1092581 123969 210 4.868613 10.2240873 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 311 2.75e-80   NTclustered gi|300078498|gb|GU001160.1| 5755 g123436 i0 96.316 37.7952380952381 190 6 90 1 1 189 5351 5162 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7937 311 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10399768 10399768 PRJNA1092581_P_NODE_25289_length_553_cov_12.304167_g24761_i0 PRJNA1092581 25289 553 12.304167 68.04204351 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 396 2.18e-105   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g24761 i0 82.851 29.493670886076 484 41 82 29 11 466 7032 6563 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16310 396 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
10401090 10401090 PRJNA1092581_P_NODE_74709_length_301_cov_3.872807_g74176_i0 PRJNA1092581 74709 301 3.872807 11.65714907 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 211 4.37e-50   NTclustered gi|470506360|ref|XM_004348693.1| 1257118 g74176 i0 96.85 0.514950166112957 127 3 42 1 31 157 1963 2088 Acanthamoeba castellanii str. Neff ankyrin repeat and zinc finger domain protein, putative (ACA1_035590), partial mRNA blastn 155 211 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11221395 11221395 PRJNA1092581_P_NODE_125809_length_204_cov_6.389313_g125276_i0 PRJNA1092581 125809 204 6.389313 13.03419852 Acanthamoeba 5754 Discosea other_Eukaryota 350 5.64e-92   NTclustered gi|2044079936|gb|MZ272128.1| 5756 g125276 i0 98.98 96.6274509803922 196 1 96 1 1 196 1147 1341 Acanthamoeba sp. isolate AcW149 small subunit ribosomal RNA gene, partial sequence blastn 19712 350 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
11675660 11675660 PRJNA1092581_P_NODE_45570_length_401_cov_4.439024_g45037_i0 PRJNA1092581 45570 401 4.439024 17.80048624 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 390 7.169999999999999e-104   NTclustered gi|470436492|ref|XM_004338846.1| 1257118 g45037 i0 85.455 0.960099750623441 385 45 94 7 24 399 139 521 Acanthamoeba castellanii str. Neff hydroxyisourate hydrolase (ACA1_042320), partial mRNA blastn 385 390 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11676728 11676728 PRJNA1092581_P_NODE_88370_length_272_cov_5.040201_g87837_i0 PRJNA1092581 88370 272 5.040201 13.70934672 Didymium iridis 5793 Evosea other_Eukaryota 244 3.8399999999999996e-60   NTclustered gi|2687|emb|X60210.1| 5793 g87837 i0 88.67 13.0772058823529 203 19 74 4 72 272 5257 5057 D.iridis LSU rRNA gene blastn 3557 244 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
12950680 12950680 PRJNA1092581_P_NODE_44431_length_407_cov_4.035928_g43898_i0 PRJNA1092581 44431 407 4.035928 16.42622696 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 259 2.14e-64   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g43898 i0 82.085 17.2162162162162 307 51 75 4 5 309 13 317 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 7007 259 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14226449 14226449 PRJNA1092581_P_NODE_73892_length_303_cov_3.834783_g73359_i0 PRJNA1092581 73892 303 3.834783 11.61939249 Arcyria sp. 'tenuissima' 3129282 Evosea other_Eukaryota 412 1.1199999999999997e-110   NTclustered gi|2698738389|gb|PP491458.1| 3129282 g73359 i0 92.708 0.95049504950495 288 17 94 2 1 284 3856 3569 Arcyria sp. 'tenuissima' voucher sc32644 internal transcribed spacer region, partial sequence blastn 288 412 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria sp. 'tenuissima'
14226951 14226951 PRJNA1092581_P_NODE_94452_length_261_cov_42.781915_g93919_i0 PRJNA1092581 94452 261 42.781915 111.66079815 Vannella simplex 197532 Discosea other_Eukaryota 453 5.5800000000000005e-123   NTclustered gi|284192635|gb|GQ265433.1| 197532 g93919 i0 99.206 96.1340996168582 252 1 97 1 10 261 683 433 Vannella simplex strain Geneva clone A172.6 18S ribosomal RNA gene, partial sequence blastn 25091 453 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
15499167 15499167 PRJNA1092581_P_NODE_28433_length_520_cov_103.310962_g27901_i0 PRJNA1092581 28433 520 103.310962 537.2170024 Physarum cinereum 289951 Evosea other_Eukaryota 859 0   NTclustered gi|374255699|emb|HE614599.1| 289951 g27901 i0 98.367 91.6019230769231 490 6 94 2 12 501 1752 1265 Physarum cinereum partial 18S rRNA gene, strain Idn-2 blastn 47633 859 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum
17596305 17596305 PRJNA1092581_P_NODE_65614_length_325_cov_2.373016_g65081_i0 PRJNA1092581 65614 325 2.373016 7.712302 Vermamoeba 1260114 Tubulinea other_Eukaryota 501 2.519999999999999e-137   NTclustered gi|909719645|gb|KT185625.1| 5778 g65081 i0 96.393 42.7661538461538 305 9 94 2 1 304 5778 5475 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13899 501 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19322890 19322890 PRJNA1092581_P_NODE_51956_length_372_cov_3.561873_g51423_i0 PRJNA1092581 51956 372 3.561873 13.25016756 Didymium iridis 5793 Evosea other_Eukaryota 344 5.21e-90   NTclustered gi|2687|emb|X60210.1| 5793 g51423 i0 85.503 24.7043010752688 338 39 90 8 20 354 687 1017 D.iridis LSU rRNA gene blastn 9190 344 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
20144648 20144648 PRJNA1092581_P_NODE_39876_length_433_cov_5.016667_g39343_i0 PRJNA1092581 39876 433 5.016667 21.72216811 Cochliopodium 313557 Discosea other_Eukaryota 750 0   NTclustered gi|399764160|gb|JQ271671.1| 313997 g39343 i0 99.515 33.5173210161663 412 2 95 0 1 412 414 3 Cochliopodium minus strain 4692S 18S ribosomal RNA gene, partial sequence blastn 14513 750 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
20598735 20598735 PRJNA1092581_P_NODE_72577_length_306_cov_4.429185_g72044_i0 PRJNA1092581 72577 306 4.429185 13.5533061 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 372 1.93e-98   NTclustered gi|470519101|ref|XM_004353377.1| 1257118 g72044 i0 95.671 0.967320261437909 231 10 75 0 56 286 762 532 Acanthamoeba castellanii str. Neff ribosomal protein l7/l12 cterminal domain containing protein (ACA1_074680), partial mRNA blastn 296 372 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20598777 20598777 PRJNA1092581_P_NODE_74337_length_302_cov_3.235808_g73804_i0 PRJNA1092581 74337 302 3.235808 9.77214016 Didymium clavus 289976 Evosea other_Eukaryota 490 5.03e-134   NTclustered gi|381139240|emb|HE655047.1| 289976 g73804 i0 97.88 59.9569536423841 283 6 94 0 20 302 1012 1294 Didymium clavus partial 28S rRNA gene, isolate It-IG45 blastn 18107 490 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium clavus
20599159 20599159 PRJNA1092581_P_NODE_89357_length_270_cov_10.294416_g88824_i0 PRJNA1092581 89357 270 10.294416 27.7949232 Entamoeba gingivalis 38877 Evosea other_Eukaryota 351 2.1799999999999995e-92   NTclustered gi|2425687086|gb|OQ225454.1| 38877 g88824 i0 98.98 71.1555555555556 196 2 73 0 1 196 196 1 Entamoeba gingivalis isolate IH_ST2 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 19212 351 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
21873720 21873720 PRJNA1092581_P_NODE_41758_length_422_cov_2.931232_g41225_i0 PRJNA1092581 41758 422 2.931232 12.36979904 Physarum polycephalum 5791 Evosea other_Eukaryota 569 9.069999999999996e-158   NTclustered gi|15284027|dbj|AB070525.1| 5791 g41225 i0 92.327 51.0260663507109 404 26 95 5 1 401 465 64 Physarum polycephalum ub1 mRNA for ubiquitin 1, complete cds blastn 21533 569 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
22694713 22694713 PRJNA1092581_P_NODE_112538_length_236_cov_2.509202_g112005_i0 PRJNA1092581 112538 236 2.509202 5.92171672 Didymiaceae 1115745 Evosea other_Eukaryota 147 9.44e-31   NTclustered gi|116010585|emb|AM407430.1| 290853 g112005 i0 89.655 3.72881355932203 116 10 49 2 27 141 1915 2029 Lepidoderma carestianum partial 26S rRNA gene, isolate K18 blastn 880 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Lepidoderma Lepidoderma carestianum
22694790 22694790 PRJNA1092581_P_NODE_119478_length_223_cov_14.640000_g118945_i0 PRJNA1092581 119478 223 14.64 32.6472 Vannellidae 95227 Discosea other_Eukaryota 335 1.7599999999999994e-87   NTclustered gi|62865948|gb|AY929923.1| 325072 g118945 i0 97.938 71.7757847533632 194 3 87 1 9 202 1805 1613 Platyamoeba sp. strain VV/I 18S small subunit ribosomal RNA gene, partial sequence blastn 16006 335 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain VV/I
23150271 23150271 PRJNA1092581_P_NODE_86039_length_276_cov_88.906404_g85506_i0 PRJNA1092581 86039 276 88.906404 245.38167504 Cochliopodium minus 313997 Discosea other_Eukaryota 340 4.84e-89   NTclustered gi|330902862|gb|JF298257.1| 313997 g85506 i0 95.413 8.74275362318841 218 3 79 6 60 276 4 215 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2413 340 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;