RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1089179" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA1089179 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2745555 2745555 PRJNA1089179_P_NODE_23_length_2254_cov_201.654746_g19_i0 PRJNA1089179 23 2254 201.654746 4545.29797484 brine shrimp iflavirus 3 2900464 Viruses Viruses 3999 0   NTclustered gi|2209094748|gb|OL472446.1| 2900464 g19 i0 99.057 10.8531499556344 2228 21 99 0 24 2251 7008 9235 MAG: Brine shrimp iflavirus 3 isolate VIE/10 RNA-dependent RNA polymerase gene, complete cds blastn 24463 3999 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus brine shrimp iflavirus 3
18046487 18046487 PRJNA1089179_P_NODE_11475_length_277_cov_1.509804_g11457_i0 PRJNA1089179 11475 277 1.509804 4.18215708 Zebrafish picornavirus 1 2304617 Viruses Viruses 427 3.6199999999999996e-115   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g11457 i0 96.512 2.7942238267148 258 9 93 0 20 277 7485 7742 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 774 427 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;