RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1089179" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 3 ✖

bioproject 1

  • PRJNA1089179 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1017453 1017453 PRJNA1089179_P_NODE_16301_length_244_cov_1.192982_g16283_i0 PRJNA1089179 16301 244 1.192982 2.91087608 Viridiplantae 33090 Rhodophyta other_Eukaryota 183 7.479999999999997e-42   NTclustered gi|24462103|gb|AF545591.1| 130081 g16283 i0 80.769 29.905737704918 234 45 96 0 1 234 643 410 Galdieria sulphuraria strain SAG 108.79 voucher SAG:108.79 elongation factor Tu (tufA) gene, partial cds; chloroplast blastn 7297 183 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria sulphuraria
1469438 1469438 PRJNA1089179_P_NODE_62_length_1589_cov_9.517150_g43_i1 PRJNA1089179 62 1589 9.5171500000000009 151.2275135 Dasyclonium flaccidum 2007274 Rhodophyta other_Eukaryota 370 3.97e-97   NTclustered gi|1203234094|gb|MF093977.1| 2007274 g43 i1 73.876 37.4298300818125 1045 221 64 40 237 1252 174 1195 Dasyclonium flaccidum isolate PD1087 cytochrome oxidase subunit 1 (cox1) gene, complete cds; mitochondrial blastn 59476 370 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Dasyclonium Dasyclonium flaccidum
10398123 10398123 PRJNA1089179_P_NODE_49_length_1715_cov_7.073691_g43_i0 PRJNA1089179 49 1715 7.073691 121.31380065 Dasyclonium flaccidum 2007274 Rhodophyta other_Eukaryota 335 1.57e-86   NTclustered gi|1203234094|gb|MF093977.1| 2007274 g43 i0 73.61 30.8583090379009 989 212 56 39 237 1196 174 1142 Dasyclonium flaccidum isolate PD1087 cytochrome oxidase subunit 1 (cox1) gene, complete cds; mitochondrial blastn 52922 335 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Dasyclonium Dasyclonium flaccidum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;