RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1089179" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1089179 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2292923 2292923 PRJNA1089179_P_NODE_2062_length_531_cov_1.558952_g2044_i0 PRJNA1089179 2062 531 1.558952 8.27803512 Nostocales 1161 Bacteria Bacteria 798 0   NTclustered gi|2874254083|emb|OY970166.1| 1211 g2044 i0 93.785 288.900188323917 531 33 100 0 1 531 3672983 3672453 MAG: uncultured cyanobacterium isolate MFD01721.bin.c.4 genome assembly, chromosome: 1 blastn 153406 798 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
2292927 2292927 PRJNA1089179_P_NODE_8942_length_305_cov_4.327586_g8924_i0 PRJNA1089179 8942 305 4.327586 13.1991373 Cyanophyceae 3028117 Bacteria Bacteria 448 3.1e-121   NTclustered gi|427375308|gb|CP003558.1| 195253 g8924 i0 93.115 180.183606557377 305 21 100 0 1 305 187482 187786 Synechococcus sp. PCC 6312, complete genome blastn 54956 448 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. PCC 6312
3568168 3568168 PRJNA1089179_P_NODE_16663_length_243_cov_0.905882_g16645_i0 PRJNA1089179 16663 243 0.905882 2.20129326 Bacteria 2 Bacteria Bacteria 58.4 4.71e-4   NTclustered gi|1210228378|dbj|AP018288.1| 2005458 g16645 i0 94.737 1.02880658436214 38 0 15 2 205 240 950508 950471 Nostoc sp. NIES-4103 DNA, nearly complete genome blastn 250 58.4 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. NIES-4103
7847478 7847478 PRJNA1089179_P_NODE_16287_length_244_cov_1.350877_g16269_i0 PRJNA1089179 16287 244 1.350877 3.29613988 Halotia branconii 1620816 Bacteria Bacteria 58.4 4.73e-4   NTclustered gi|2500982325|gb|CP124543.1| 1539056 g16269 i0 100 0.754098360655738 31 0 13 0 23 53 5655715 5655745 Halotia branconii CENA392 chromosome, complete genome blastn 184 58.4 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nodulariaceae Halotia Halotia branconii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;