RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1089179" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1089179 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7847484 7847484 PRJNA1089179_P_NODE_17727_length_233_cov_2.625000_g17709_i0 PRJNA1089179 17727 233 2.625 6.11625 Aureliella sp. 2795609 Bacteria Bacteria 274 4.09e-69   NTclustered gi|2626244095|emb|OY829846.1| 2795609 g17709 i0 88.839 720.892703862661 224 23 96 2 1 223 5640539 5640317 MAG: Aureliella sp. isolate e39ea203-26a8-405f-9782-9267d5c1de48 genome assembly, chromosome: 1 blastn 167968 274 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Aureliella Aureliella sp.
17595340 17595340 PRJNA1089179_P_NODE_18014_length_227_cov_2.571429_g17996_i0 PRJNA1089179 18014 227 2.571429 5.83714383 Chlamydiia 204429 Bacteria Bacteria 233 6.73e-57   NTclustered gi|576939296|gb|KF805948.1| 424991 g17996 i0 87.081 38.5286343612335 209 23 91 4 21 227 1676 1882 Uncultured Chlamydiaceae bacterium clone KW110713-4 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 8746 233 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae   uncultured Chlamydiaceae bacterium
18046550 18046550 PRJNA1089179_P_NODE_915_length_690_cov_2.659643_g898_i0 PRJNA1089179 915 690 2.659643 18.3515367 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 573 1.1899999999999998e-158   NTclustered gi|2874254096|emb|OY970179.1| 412056 g898 i0 85.159 166.578260869565 566 77 81 7 90 651 1727682 1728244 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 114939 573 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;