RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1088503" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1088503 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9122134 9122134 PRJNA1088503_P_NODE_4728_length_385_cov_30068.505618_g4362_i0 PRJNA1088503 4728 385 30068.505618 115763.7466293 Chlorella variabilis 554065 Plants Plants 158 7.57e-34   NTclustered gi|552839912|ref|XM_005849855.1| 554065 g4362 i0 81.675 1.22597402597403 191 33 49 2 80 269 402 591 Chlorella variabilis hypothetical protein (CHLNCDRAFT_56085) mRNA, complete cds blastn 472 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
11673221 11673221 PRJNA1088503_P_NODE_9530_length_203_cov_51504.316092_g9158_i0 PRJNA1088503 9530 203 51504.316092 104553.76166676 Koliella corcontica 155904 Plants Plants 246 7.56e-61   NTclustered gi|723456950|ref|NC_025536.1| 155904 g9158 i0 92.982 102.866995073892 171 9 84 3 1 170 82627 82459 Koliella corcontica culture-collection SAG:24.84 chloroplast, complete genome blastn 20882 246 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella corcontica
14223284 14223284 PRJNA1088503_P_NODE_7792_length_252_cov_47562.291480_g7420_i0 PRJNA1088503 7792 252 47562.29148 119856.9745296 Capsosiphon fulvescens 205396 Plants Plants 154 6.09e-33   NTclustered gi|1526689644|ref|NC_039920.1| 205396 g7420 i0 89.344 9.03571428571429 122 13 48 0 37 158 81960 81839 Capsosiphon fulvescens plastid, complete genome blastn 2277 154 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Capsosiphon Capsosiphon fulvescens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;