RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1087264" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1087264 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
194079 194079 PRJNA1087264_P_NODE_3301_length_362_cov_1.038339_g3220_i0 PRJNA1087264 3301 362 1.038339 3.75878718 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 285 3.1099999999999996e-72   NTclustered gi|2105975276|gb|MZ706949.1| 104777 g3220 i0 81.461 80.8508287292818 356 58 97 8 3 354 26791 27142 Brachionus calyciflorus chromosome I mitochondrion, complete sequence blastn 29268 285 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
5296802 5296802 PRJNA1087264_P_NODE_16845_length_165_cov_0.879310_g16763_i0 PRJNA1087264 16845 165 0.87931 1.4508615 Lepadellidae sp. SHQC150123a 1804024 Rotifera other_Eukaryota 172 1.02e-38   NTclustered gi|1009658444|gb|KU720095.1| 1804024 g16763 i0 87.333 63.2484848484848 150 19 91 0 16 165 617 468 Lepadellidae sp. SHQC150123a cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 10436 172 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae   Lepadellidae sp. SHQC150123a
6571948 6571948 PRJNA1087264_P_NODE_306_length_1126_cov_12.756732_g262_i0 PRJNA1087264 306 1126 12.756732 143.64080232 Asplanchna sp. 3231738 Rotifera other_Eukaryota 433 3.5e-116   NTclustered gi|2778092479|gb|PP988071.1| 3231738 g262 i0 75.556 14.6438721136767 1035 170 88 72 11 1005 2406 1415 Asplanchna sp. chromosome I mitochondrion, complete sequence blastn 16489 433 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sp.
20595076 20595076 PRJNA1087264_P_NODE_13417_length_172_cov_1.073171_g13335_i0 PRJNA1087264 13417 172 1.073171 1.84585412 Asplanchna brightwellii 2005548 Rotifera other_Eukaryota 110 8.44e-20   NTclustered gi|2899343712|gb|PQ788833.1| 2005548 g13335 i0 83.2 35.5116279069767 125 16 73 4 44 168 5996 6115 Asplanchna brightwellii chromosome I mitochondrion, complete sequence blastn 6108 110 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna brightwellii
25243791 25243791 PRJNA1087264_P_NODE_6560_length_248_cov_1.025126_g6478_i0 PRJNA1087264 6560 248 1.025126 2.54231248 Ploima 84394 Rotifera other_Eukaryota 220 5.81e-53   NTclustered gi|72153656|gb|DQ089731.1| 96446 g6478 i0 82.661 99.4072580645161 248 43 100 0 1 248 469 222 Lecane bulla cytochrome oxidase subunit I gene, partial cds; mitochondrial blastn 24653 220 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;