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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1087264" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA1087264 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4020672 4020672 PRJNA1087264_P_NODE_4084_length_322_cov_1.681319_g4002_i0 PRJNA1087264 4084 322 1.681319 5.41384718 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 139 2.26e-28   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g4002 i0 85.401 41.8074534161491 137 16 42 4 67 201 41659 41793 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 13462 139 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
5296834 5296834 PRJNA1087264_P_NODE_2185_length_455_cov_2.522167_g2104_i0 PRJNA1087264 2185 455 2.522167 11.47585985 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 276 2.3999999999999996e-69   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g2104 i0 80.267 74.3472527472528 375 66 81 6 11 378 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 276 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
5296857 5296857 PRJNA1087264_P_NODE_4265_length_315_cov_1.853383_g4183_i0 PRJNA1087264 4265 315 1.853383 5.83815645 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 302 2.65e-77   NTclustered gi|1219685856|gb|KY965925.1| 1440116 g4183 i0 85.616 84.968253968254 292 36 92 6 25 313 737 449 Lagenidium giganteum f. caninum isolate UF15-01 heat shock protein 90 (hsp90) gene, partial cds blastn 26765 302 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
9121630 9121630 PRJNA1087264_P_NODE_1408_length_564_cov_1.598058_g1332_i0 PRJNA1087264 1408 564 1.598058 9.01304712 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 726 0   NTclustered gi|325194423|emb|FR825253.1| 890382 g1332 i0 99.012 72.5372340425532 405 4 72 0 1 405 532 936 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 40911 726 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
16771023 16771023 PRJNA1087264_P_NODE_3194_length_369_cov_2.146875_g3113_i0 PRJNA1087264 3194 369 2.146875 7.92196875 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 612 1.2799999999999999e-170   NTclustered gi|325194684|emb|FR825494.1| 890382 g3113 i0 95.664 78.10027100271 369 16 100 0 1 369 376 8 Albugo laibachii Nc14, genomic contig CONTIG_2365_NC14_v4_847_33331 blastn 28819 612 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
16771048 16771048 PRJNA1087264_P_NODE_5754_length_266_cov_1.663594_g5672_i0 PRJNA1087264 5754 266 1.663594 4.42516004 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 486 5.629999999999999e-133   NTclustered gi|345019155|gb|JF504671.1| 65357 g5672 i0 99.624 100.172932330827 266 1 100 0 1 266 532 797 Albugo candida isolate ALC_1 small subunit ribosomal RNA gene, partial sequence blastn 26646 486 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
18869067 18869067 PRJNA1087264_P_NODE_14515_length_167_cov_0.864407_g14433_i0 PRJNA1087264 14515 167 0.864407 1.44355969 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 134 4.86e-27   NTclustered gi|325189941|emb|FR824284.1| 890382 g14433 i0 88.288 7.1437125748503 111 13 66 0 1 111 21135 21025 Albugo laibachii Nc14, genomic contig CONTIG_239_NC14_v4_40788_246 blastn 1193 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
21419469 21419469 PRJNA1087264_P_NODE_6257_length_254_cov_3.512195_g6175_i0 PRJNA1087264 6257 254 3.512195 8.9209753 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 464 2.4999999999999994e-126   NTclustered gi|575498660|gb|KF853245.1| 65357 g6175 i0 99.606 99.6181102362205 254 1 100 0 1 254 398 145 Albugo candida strain ACCS 18S ribosomal RNA gene, partial sequence blastn 25303 464 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
23146202 23146202 PRJNA1087264_P_NODE_13719_length_170_cov_0.958678_g13637_i0 PRJNA1087264 13719 170 0.958678 1.6297526 Globisporangium paroecandrum 2125995 SAR_Eukaryotes SAR_Eukaryotes 182 1.74e-41   NTclustered gi|299777539|gb|GU071882.1| 2125995 g13637 i0 86.228 27.4058823529412 167 23 98 0 4 170 197 31 Pythium paroecandrum strain PPRI8611 beta-tubulin gene, partial cds blastn 4659 182 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium paroecandrum
24419885 24419885 PRJNA1087264_P_NODE_2640_length_410_cov_1.204986_g2559_i0 PRJNA1087264 2640 410 1.204986 4.9404426 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 387 9.5e-103   NTclustered gi|166038052|emb|CU349720.1| 100861 g2559 i0 84.518 90.7170731707317 394 57 96 4 15 406 461 70 Aphanomyces euteiches cDNA blastn 37194 387 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24419920 24419920 PRJNA1087264_P_NODE_6440_length_250_cov_1.880597_g6358_i0 PRJNA1087264 6440 250 1.880597 4.7014925 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 462 8.83e-126   NTclustered gi|67090790|gb|DQ007482.1| 65357 g6358 i0 100 99.82 250 0 100 0 1 250 23 272 Albugo candida isolate AR283 large subunit ribosomal RNA gene, partial sequence blastn 24955 462 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
24419935 24419935 PRJNA1087264_P_NODE_7800_length_225_cov_1.698864_g7718_i0 PRJNA1087264 7800 225 1.698864 3.822444 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|675193056|ref|XM_008907165.1| 761204 g7718 i0 100 0.133333333333333 30 0 13 0 54 83 353 382 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 30 56.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;