RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1087264" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1087264 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14222812 14222812 PRJNA1087264_P_NODE_7312_length_233_cov_1.380435_g7230_i0 PRJNA1087264 7312 233 1.380435 3.21641355 Paracentrotus lividus 7656 Echinodermata other_Eukaryota 171 5.519999999999999e-38   NTclustered gi|15990756|emb|AJ414568.1| 7656 g7230 i0 84.27 16.137339055794 178 24 76 4 12 187 9 184 Paracentrotus mRNA for ribosomal protein L8 (suL8 gene) blastn 3760 171 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Echinidae Paracentrotus Paracentrotus lividus
22694328 22694328 PRJNA1087264_P_NODE_20858_length_162_cov_0.902655_g20776_i0 PRJNA1087264 20858 162 0.902655 1.4623011 Lytechinus 7652 Echinodermata other_Eukaryota 86.1 1.33e-12   NTclustered gi|2707422527|ref|XM_064102758.1| 7653 g20776 i0 83.333 1.77777777777778 96 12 58 4 37 130 719 626 PREDICTED: Lytechinus pictus crooked neck-like protein 1 (LOC129264378), transcript variant X2, mRNA blastn 288 86.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;