RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1087264" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1087264 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10397321 10397321 PRJNA1087264_P_NODE_11829_length_183_cov_1.641791_g11747_i0 PRJNA1087264 11829 183 1.641791 3.00447753 Vannella sp. BEN3V 1215631 Discosea other_Eukaryota 259 8.56e-65   NTclustered gi|399764216|gb|JQ271727.1| 1215631 g11747 i0 92.473 100.666666666667 186 7 100 5 1 183 626 807 Vannella sp. BEN3V 18S ribosomal RNA gene, partial sequence blastn 18422 259 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. BEN3V
12947787 12947787 PRJNA1087264_P_NODE_371_length_1032_cov_2.307223_g321_i0 PRJNA1087264 371 1032 2.307223 23.81054136 Ripella sp. 805 1217113 Discosea other_Eukaryota 837 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g321 i0 94.679 52.9147286821705 545 19 53 8 1 542 538 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 54608 837 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
13770797 13770797 PRJNA1087264_P_NODE_3491_length_351_cov_2.298013_g3409_i0 PRJNA1087264 3491 351 2.298013 8.06602563 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 278 5.03e-70   NTclustered gi|53829569|gb|AY582837.1| 43142 g3409 i0 80.966 83.0740740740741 352 65 100 2 1 351 574 924 Acanthamoeba culbertsoni HSP70 gene, partial cds blastn 29159 278 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba culbertsoni
14222745 14222745 PRJNA1087264_P_NODE_1812_length_500_cov_1.432373_g1732_i0 PRJNA1087264 1812 500 1.432373 7.161865 Cochliopodium minus 313997 Discosea other_Eukaryota 649 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g1732 i0 91.649 46.942 479 23 100 12 1 468 625 153 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 23471 649 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;