RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1087264" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1087264 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
194051 194051 PRJNA1087264_P_NODE_19821_length_163_cov_0.894737_g19739_i0 PRJNA1087264 19821 163 0.894737 1.45842131 Deinococcus gobiensis 502394 Bacteria Bacteria 148 1.68e-31   NTclustered gi|379998737|gb|CP002191.1| 745776 g19739 i0 83.851 3.98159509202454 161 20 97 6 6 163 1308100 1308257 Deinococcus gobiensis I-0, complete genome blastn 649 148 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
9121632 9121632 PRJNA1087264_P_NODE_14308_length_167_cov_0.864407_g14226_i0 PRJNA1087264 14308 167 0.864407 1.44355969 Deinococcus ficus 317577 Bacteria Bacteria 244 2.15e-60   NTclustered gi|1220362168|gb|CP021081.1| 317577 g14226 i0 94.872 133.335329341317 156 8 93 0 1 156 2341438 2341593 Deinococcus ficus strain CC-FR2-10, complete genome blastn 22267 244 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
9945640 9945640 PRJNA1087264_P_NODE_8688_length_214_cov_1.090909_g8606_i0 PRJNA1087264 8688 214 1.090909 2.33454526 Bacteria 2 Bacteria Bacteria 396 7.559999999999996e-106   NTclustered gi|155128|gb|J04639.1|TTHTAQP1A 271 g8606 i0 100 46.7570093457944 214 0 100 0 1 214 756 543 Thermus aquaticus DNA polymerase (PolI) gene blastn 10006 396 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;