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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA1087264" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 15 ✖

bioproject 1

  • PRJNA1087264 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2292798 2292798 PRJNA1087264_P_NODE_21962_length_160_cov_2.279279_g21880_i0 PRJNA1087264 21962 160 2.279279 3.6468464 Entamoeba 5758 Evosea other_Eukaryota 106 1e-18   NTclustered gi|511091168|dbj|AK422924.1| 33085 g21880 i0 89.286 9.86875 84 9 53 0 1 84 1204 1287 Entamoeba invadens cDNA clone: Xei-007J10, elongation factor 1-alpha, putative, complete cds, strain: IP1 blastn 1579 106 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
2744769 2744769 PRJNA1087264_P_NODE_3583_length_347_cov_0.916107_g3501_i0 PRJNA1087264 3583 347 0.916107 3.17889129 Cavenderia fasciculata 261658 Evosea other_Eukaryota 182 4.02e-41   NTclustered gi|470269854|ref|XM_004362533.1| 261658 g3501 i0 77.882 6.05763688760807 321 52 89 16 36 345 402 90 Cavenderia fasciculata 60S ribosomal protein L3 (rpl3), partial mRNA blastn 2102 182 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
2744821 2744821 PRJNA1087264_P_NODE_9703_length_202_cov_1.457516_g9621_i0 PRJNA1087264 9703 202 1.457516 2.94418232 Filamoeba nolandi 136452 Evosea other_Eukaryota 67.6 6.28e-7   NTclustered gi|146448849|gb|EF513192.1| 136452 g9621 i0 97.436 0.193069306930693 39 1 19 0 1 39 1317 1355 Filamoeba nolandi elongation factor 1A (EF1A) gene, partial cds blastn 39 67.6 1 Eukaryota Amoebozoa   Evosea Variosea     Filamoeba Filamoeba nolandi
7846675 7846675 PRJNA1087264_P_NODE_14807_length_167_cov_0.864407_g14725_i0 PRJNA1087264 14807 167 0.864407 1.44355969 Stemonaria longa 1258717 Evosea other_Eukaryota 243 7.739999999999999e-60   NTclustered gi|426281758|gb|JX681132.1| 1258717 g14725 i0 93.293 98.311377245509 164 11 98 0 4 167 718 555 Stemonaria longa actin gene, partial cds blastn 16418 243 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonaria Stemonaria longa
10397321 10397321 PRJNA1087264_P_NODE_11829_length_183_cov_1.641791_g11747_i0 PRJNA1087264 11829 183 1.641791 3.00447753 Vannella sp. BEN3V 1215631 Discosea other_Eukaryota 259 8.56e-65   NTclustered gi|399764216|gb|JQ271727.1| 1215631 g11747 i0 92.473 100.666666666667 186 7 100 5 1 183 626 807 Vannella sp. BEN3V 18S ribosomal RNA gene, partial sequence blastn 18422 259 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. BEN3V
12947787 12947787 PRJNA1087264_P_NODE_371_length_1032_cov_2.307223_g321_i0 PRJNA1087264 371 1032 2.307223 23.81054136 Ripella sp. 805 1217113 Discosea other_Eukaryota 837 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g321 i0 94.679 52.9147286821705 545 19 53 8 1 542 538 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 54608 837 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
13770797 13770797 PRJNA1087264_P_NODE_3491_length_351_cov_2.298013_g3409_i0 PRJNA1087264 3491 351 2.298013 8.06602563 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 278 5.03e-70   NTclustered gi|53829569|gb|AY582837.1| 43142 g3409 i0 80.966 83.0740740740741 352 65 100 2 1 351 574 924 Acanthamoeba culbertsoni HSP70 gene, partial cds blastn 29159 278 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba culbertsoni
14222745 14222745 PRJNA1087264_P_NODE_1812_length_500_cov_1.432373_g1732_i0 PRJNA1087264 1812 500 1.432373 7.161865 Cochliopodium minus 313997 Discosea other_Eukaryota 649 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g1732 i0 91.649 46.942 479 23 100 12 1 468 625 153 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 23471 649 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
15496649 15496649 PRJNA1087264_P_NODE_11733_length_184_cov_1.214815_g11651_i0 PRJNA1087264 11733 184 1.214815 2.2352596 Acytostelium subglobosum 361139 Evosea other_Eukaryota 71.3 4.33e-8   NTclustered gi|831770523|ref|XM_012897573.1| 1410327 g11651 i0 95.455 0.239130434782609 44 2 24 0 2 45 395 352 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 44 71.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
15496760 15496760 PRJNA1087264_P_NODE_6813_length_242_cov_1.860104_g6731_i0 PRJNA1087264 6813 242 1.860104 4.50145168 Arcyria similaris 3080334 Evosea other_Eukaryota 158 4.49e-34   NTclustered gi|2694740592|gb|OR672140.1| 3080334 g6731 i0 79.736 22.8099173553719 227 38 92 6 20 242 238 16 Arcyria similaris isolate HFNNU4396 translation elongation factor 1-alpha (EF1A) gene, partial cds blastn 5520 158 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria similaris
16319961 16319961 PRJNA1087264_P_NODE_17373_length_165_cov_0.879310_g17291_i0 PRJNA1087264 17373 165 0.87931 1.4508615 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 300 4.46e-77   NTclustered gi|319923643|gb|HQ227714.1| 590481 g17291 i0 99.394 97.2787878787879 165 1 100 0 1 165 363 199 Uncultured Amoebozoa clone plate106h02b 18S ribosomal RNA gene, partial sequence blastn 16051 300 1 Eukaryota Amoebozoa             uncultured Amoebozoa
16770944 16770944 PRJNA1087264_P_NODE_12034_length_182_cov_1.150376_g11952_i0 PRJNA1087264 12034 182 1.150376 2.09368432 Dictyostelium purpureum 5786 Evosea other_Eukaryota 154 4.13e-33   NTclustered gi|330845916|ref|XM_003294762.1| 5786 g11952 i0 82.873 4.27472527472527 181 22 96 8 1 175 481 304 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_100069), partial mRNA blastn 778 154 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
18045704 18045704 PRJNA1087264_P_NODE_11875_length_183_cov_1.141791_g11793_i0 PRJNA1087264 11875 183 1.141791 2.08947753 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 178 2.4599999999999998e-40   NTclustered gi|354683888|gb|JN048920.1| 361077 g11793 i0 85.143 2.18032786885246 175 25 96 1 5 179 315 142 Tieghemostelium lacteum 60S ribosomal protein L5 gene, complete cds blastn 399 178 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
18869079 18869079 PRJNA1087264_P_NODE_335_length_1083_cov_1.554159_g289_i0 PRJNA1087264 335 1083 1.554159 16.83154197 Dictyostelium 5782 Evosea other_Eukaryota 691 0   NTclustered gi|7276|emb|X55972.1| 44689 g289 i0 78.742 72.6445060018467 1049 211 96 11 1 1043 1058 16 D. discoideum EF1-II gene for elongation factor 1 alpha blastn 78674 693 0.997113997113997 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
23146304 23146304 PRJNA1087264_P_NODE_8079_length_222_cov_1.173410_g7997_i0 PRJNA1087264 8079 222 1.17341 2.6049702 Heterostelium album 2086695 Evosea other_Eukaryota 300 6.37e-77   NTclustered gi|1160564476|ref|XM_020583030.1| 670386 g7997 i0 90.991 99.2792792792793 222 20 100 0 1 222 229 450 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 22040 300 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;