RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1086823" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1086823 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5296592 5296592 PRJNA1086823_P_NODE_2305_length_498_cov_1.101176_g2188_i0 PRJNA1086823 2305 498 1.101176 5.48385648 uncultured crenarchaeote 29281 Archaea Archaea 713 0   NTclustered gi|22797874|emb|AJ496176.1| 29281 g2188 i0 92.57 135.471887550201 498 35 100 2 1 498 6884 7379 Uncultured crenarchaeote 34 kb genomic fragment blastn 67465 713 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
12947525 12947525 PRJNA1086823_P_NODE_18731_length_243_cov_0.917647_g18614_i0 PRJNA1086823 18731 243 0.917647 2.22988221 Candidatus Nitrosotalea okcheonensis 1903276 Archaea Archaea 252 2.01e-62   NTclustered gi|1279331958|emb|LT841358.1| 1903276 g18614 i0 85.95 40.5514403292181 242 26 99 8 1 240 1284012 1284247 Nitrosotalea sp. CS isolate NCS1 genome assembly, chromosome: 1 blastn 9854 252 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Candidatus Nitrosotalea okcheonensis
13770747 13770747 PRJNA1086823_P_NODE_19491_length_235_cov_3.228395_g19374_i0 PRJNA1086823 19491 235 3.228395 7.58672825 Methanobacterium 2160 Archaea Archaea 340 4.009999999999999e-89   NTclustered gi|584298061|gb|KF882000.1| 483896 g19374 i0 92.797 103.83829787234 236 15 100 2 1 235 1476 1710 Methanobacterium kanagiense strain 169 23S ribosomal RNA gene, partial sequence blastn 24402 340 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium kanagiense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;