RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1086823" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1086823 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2292727 2292727 PRJNA1086823_P_NODE_15942_length_247_cov_0.896552_g15825_i0 PRJNA1086823 15942 247 0.896552 2.21448344 Geobacter 28231 Bacteria Bacteria 176 1.27e-39   NTclustered gi|2499315885|dbj|AP028061.1| 1260928 g15825 i0 82.99 56.7044534412955 194 33 79 0 46 239 1773518 1773711 Geobacter sulfurreducens subsp. ethanolicus OSK2A DNA, complete genome blastn 14006 176 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
2744328 2744328 PRJNA1086823_P_NODE_10463_length_268_cov_1.533333_g10346_i0 PRJNA1086823 10463 268 1.533333 4.10933244 Desulfomicrobium orale 132132 Bacteria Bacteria 484 2.0399999999999996e-132   NTclustered gi|987456218|gb|CP014230.1| 888061 g10346 i0 99.254 1 268 2 100 0 1 268 1362227 1362494 Desulfomicrobium orale DSM 12838 chromosome, complete genome blastn 268 484 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium orale
9121385 9121385 PRJNA1086823_P_NODE_16408_length_246_cov_0.901734_g16291_i0 PRJNA1086823 16408 246 0.901734 2.21826564 Desulfovibrio subterraneus 2718620 Bacteria Bacteria 455 1.4500000000000002e-123   NTclustered gi|2419088003|gb|CP087381.1| 2718620 g16291 i0 100 1 246 0 100 0 1 246 3715163 3715408 Desulfovibrio subterraneus strain ND17 chromosome, complete genome blastn 246 455 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio subterraneus
14222396 14222396 PRJNA1086823_P_NODE_13992_length_250_cov_0.881356_g13875_i0 PRJNA1086823 13992 250 0.881356 2.20339 Desulfovibrio subterraneus 2718620 Bacteria Bacteria 462 8.83e-126   NTclustered gi|2419088003|gb|CP087381.1| 2718620 g13875 i0 100 1 250 0 100 0 1 250 2391188 2391437 Desulfovibrio subterraneus strain ND17 chromosome, complete genome blastn 250 462 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio subterraneus
14222589 14222589 PRJNA1086823_P_NODE_5512_length_342_cov_1.141264_g5395_i0 PRJNA1086823 5512 342 1.141264 3.90312288 Desulfovibrio subterraneus 2718620 Bacteria Bacteria 632 9.079999999999999e-177   NTclustered gi|2419088003|gb|CP087381.1| 2718620 g5395 i0 100 5.41520467836257 342 0 100 0 1 342 1222902 1222561 Desulfovibrio subterraneus strain ND17 chromosome, complete genome blastn 1852 632 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio subterraneus
21870609 21870609 PRJNA1086823_P_NODE_18318_length_243_cov_0.917647_g18201_i0 PRJNA1086823 18318 243 0.917647 2.22988221 Desulfovibrio subterraneus 2718620 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2419088003|gb|CP087381.1| 2718620 g18201 i0 100 1 243 0 100 0 1 243 755268 755026 Desulfovibrio subterraneus strain ND17 chromosome, complete genome blastn 243 449 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio subterraneus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;