RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1086823" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1086823 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9121339 9121339 PRJNA1086823_P_NODE_1428_length_624_cov_4.762250_g1315_i0 PRJNA1086823 1428 624 4.76225 29.71644 Basiria sp. SAN-2005 345476 Nematoda Nematoda 174 1.27e-38   NTclustered gi|76560642|gb|DQ145667.1| 345476 g1315 i0 94.69 19.2820512820513 113 5 35 1 486 598 794 905 Basiria sp. SAN-2005 28S ribosomal RNA gene, partial sequence blastn 12032 174 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Basiria Basiria sp. SAN-2005
18045462 18045462 PRJNA1086823_P_NODE_15715_length_247_cov_0.896552_g15598_i0 PRJNA1086823 15715 247 0.896552 2.21448344 Caenorhabditis elegans 6239 Nematoda Nematoda 457 4.05e-124   NTclustered gi|1972230063|ref|NM_001025922.6| 6239 g15598 i0 100 9.04858299595142 247 0 100 0 1 247 1063 817 Caenorhabditis elegans Protein unc-87 (unc-87), mRNA blastn 2235 457 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;