RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1086823" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1086823 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15496418 15496418 PRJNA1086823_P_NODE_1693_length_572_cov_2.076152_g1578_i0 PRJNA1086823 1693 572 2.076152 11.87558944 Polychytrium aggregatum 110093 Fungi Fungi 54.7 0.016   NTclustered gi|2432144566|ref|XM_053115345.1| 110093 g1578 i0 100 0.0506993006993007 29 0 5 0 220 248 581 553 Polychytrium aggregatum ran-specific GTPase-activating protein (BJ171DRAFT_616054), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
19319539 19319539 PRJNA1086823_P_NODE_19056_length_242_cov_0.923077_g18939_i0 PRJNA1086823 19056 242 0.923077 2.23384634 Spizellomyces sp. 'palustris' 117820 Fungi Fungi 89.8 1.66e-13   NTclustered gi|1693299050|ref|NC_042879.1| 117820 g18939 i0 88 0.309917355371901 75 9 31 0 167 241 16357 16431 Spizellomyces palustris culture CBS:455.65 strain CBS 455.65 mitochondrion, complete genome blastn 75 89.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces sp. 'palustris'
23145865 23145865 PRJNA1086823_P_NODE_1279_length_664_cov_5.950931_g1166_i0 PRJNA1086823 1279 664 5.950931 39.51418184 Chytridiales sp. WB228 1445026 Fungi Fungi 152 6.339999999999999e-32   NTclustered gi|575396701|gb|KC691362.1| 1445026 g1166 i0 84.049 20.2274096385542 163 20 24 6 243 403 323 165 Chytridiales sp. WB228 28S ribosomal RNA gene, partial sequence blastn 13431 152 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales     Chytridiales sp. WB228
24419658 24419658 PRJNA1086823_P_NODE_19420_length_239_cov_4.463855_g19303_i0 PRJNA1086823 19420 239 4.463855 10.66861345 Neocallimastix frontalis 4757 Fungi Fungi 82.4 2.74e-11   NTclustered gi|2245515459|gb|ON614415.1| 4757 g19303 i0 86.25 9.21338912133891 80 6 33 4 159 238 259 333 Neocallimastix frontalis clone YoRe30_7 large subunit ribosomal RNA gene, partial sequence blastn 2202 82.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix frontalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;