contig_metadata
5 rows where analysis = "blastn", bioproject = "PRJNA1086823" and tax_phylum = "Bdellovibrionota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1468583 | 1468583 | PRJNA1086823_P_NODE_8842_length_284_cov_1.374408_g8725_i0 | PRJNA1086823 | 8842 | 284 | 1.374408 | 3.90331872 | Pseudobdellovibrio sp. HCB154 | 3386277 | Bacteria | Bacteria | 219 | 2.44e-52 | NTclustered | gi|2872995934|gb|CP176530.1| | 3386277 | g8725 | i0 | 88.764 | 1.5387323943662 | 178 | 20 | 63 | 0 | 1 | 178 | 2556357 | 2556180 | Pseudobdellovibrio sp. HCB154 chromosome, complete genome | blastn | 437 | 219 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio sp. HCB154 | ||
| 4020334 | 4020334 | PRJNA1086823_P_NODE_16504_length_246_cov_0.901734_g16387_i0 | PRJNA1086823 | 16504 | 246 | 0.901734 | 2.21826564 | Bdellovibrio sp. HM001 | 3113894 | Bacteria | Bacteria | 167 | 7.61e-37 | NTclustered | gi|2663428595|dbj|AP029174.1| | 3113894 | g16387 | i0 | 79.253 | 10.1869918699187 | 241 | 48 | 98 | 2 | 7 | 246 | 157347 | 157108 | Bdellovibrio sp. HM001 DNA, complete genome | blastn | 2506 | 167 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. HM001 | ||
| 8670657 | 8670657 | PRJNA1086823_P_NODE_3987_length_390_cov_1.422713_g3870_i0 | PRJNA1086823 | 3987 | 390 | 1.422713 | 5.5485807 | Pseudobdellovibrio | 2862745 | Bacteria | Bacteria | 693 | 0 | NTclustered | gi|507148233|ref|NR_103040.1| | 453816 | g3870 | i0 | 98.718 | 200.076923076923 | 390 | 5 | 100 | 0 | 1 | 390 | 1186 | 797 | Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence | blastn | 78030 | 693 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio exovorus | ||
| 9121546 | 9121546 | PRJNA1086823_P_NODE_6788_length_314_cov_1.294606_g6671_i0 | PRJNA1086823 | 6788 | 314 | 1.294606 | 4.06506284 | Peredibacter sp. HCB2-198 | 3383025 | Bacteria | Bacteria | 564 | 3.05e-156 | NTclustered | gi|2867657404|gb|CP174607.1| | 3383025 | g6671 | i0 | 99.045 | 173.541401273885 | 314 | 3 | 100 | 0 | 1 | 314 | 1292670 | 1292983 | Peredibacter sp. HCB2-198 chromosome, complete genome | blastn | 54492 | 564 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter sp. HCB2-198 | ||
| 22694270 | 22694270 | PRJNA1086823_P_NODE_16258_length_246_cov_1.375723_g16141_i0 | PRJNA1086823 | 16258 | 246 | 1.375723 | 3.38427858 | Bdellovibrio | 958 | Bacteria | Bacteria | 318 | 1.98e-82 | NTclustered | gi|578016248|gb|CP002190.1| | 765869 | g16141 | i0 | 90.756 | 354.30487804878 | 238 | 22 | 97 | 0 | 9 | 246 | 613151 | 612914 | Bdellovibrio bacteriovorus W, complete genome | blastn | 87159 | 318 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;