RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1086823" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA1086823 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
193656 193656 PRJNA1086823_P_NODE_12341_length_253_cov_0.866667_g12224_i0 PRJNA1086823 12341 253 0.866667 2.19266751 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 468 1.92e-127   NTclustered gi|258597881|ref|XM_001348714.2| 36329 g12224 i0 100 3.39130434782609 253 0 100 0 1 253 436 688 Plasmodium falciparum 3D7 ubiquitin carboxyl-terminal hydrolase isozyme L3 (PF3D7_1460400), partial mRNA blastn 858 468 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
4020202 4020202 PRJNA1086823_P_NODE_10284_length_270_cov_1.187817_g10167_i0 PRJNA1086823 10284 270 1.187817 3.2071059 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 499 7.349999999999998e-137   NTclustered gi|124506184|ref|XM_001351654.1| 36329 g10167 i0 100 5.61111111111111 270 0 100 0 1 270 81 350 Plasmodium falciparum 3D7 purine nucleoside phosphorylase (PF3D7_0513300), partial mRNA blastn 1515 499 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
5296637 5296637 PRJNA1086823_P_NODE_4325_length_377_cov_1.098684_g4208_i0 PRJNA1086823 4325 377 1.098684 4.14203868 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|669195891|ref|XM_008624735.1| 54757 g4208 i0 87.755 0.204244031830239 49 4 13 2 62 109 1523 1570 Plasmodium vinckei vinckei ABC1 family, putative (PVVCY_1402920), partial mRNA blastn 77 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
6120483 6120483 PRJNA1086823_P_NODE_10585_length_267_cov_1.206186_g10468_i0 PRJNA1086823 10585 267 1.206186 3.22051662 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 494 3.38e-135   NTclustered gi|116014810|gb|DQ874471.1| 5833 g10468 i0 100 22 267 0 100 0 1 267 657 391 Plasmodium falciparum strain Ph1 fructose 1,6-biphosphate aldolase gene, partial cds blastn 5874 494 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
6571561 6571561 PRJNA1086823_P_NODE_12826_length_252_cov_0.871508_g12709_i0 PRJNA1086823 12826 252 0.871508 2.19620016 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 438 1.5e-118   NTclustered gi|820695469|tpe|LN714488.1| 572307 g12709 i0 98.016 23.9801587301587 252 5 100 0 1 252 96795 97046 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 6043 438 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
10397195 10397195 PRJNA1086823_P_NODE_4489_length_371_cov_1.191275_g4372_i0 PRJNA1086823 4489 371 1.191275 4.41963025 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|669195891|ref|XM_008624735.1| 54757 g4372 i0 90.698 0.115902964959569 43 2 11 2 70 111 1570 1529 Plasmodium vinckei vinckei ABC1 family, putative (PVVCY_1402920), partial mRNA blastn 43 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
11672422 11672422 PRJNA1086823_P_NODE_16970_length_245_cov_0.906977_g16853_i0 PRJNA1086823 16970 245 0.906977 2.22209365 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 453 5.1900000000000006e-123   NTclustered gi|124506414|ref|XM_001351769.1| 36329 g16853 i0 100 3.66530612244898 245 0 100 0 1 245 1699 1943 Plasmodium falciparum 3D7 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase, putative (PF3D7_0524900), partial mRNA blastn 898 453 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
12496228 12496228 PRJNA1086823_P_NODE_9150_length_281_cov_1.500000_g9033_i0 PRJNA1086823 9150 281 1.5 4.215 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 520 5.909999999999999e-143   NTclustered gi|8918237|dbj|AB023579.1| 5833 g9033 i0 100 22.3701067615658 281 0 100 0 1 281 1309 1029 Plasmodium falciparum gene for elongation factor 2, partial cds blastn 6286 520 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
15496278 15496278 PRJNA1086823_P_NODE_10673_length_266_cov_1.316062_g10556_i0 PRJNA1086823 10673 266 1.316062 3.50072492 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 492 1.2099999999999999e-134   NTclustered gi|124804771|ref|XM_001348071.1| 36329 g10556 i0 100 3 266 0 100 0 1 266 385 120 Plasmodium falciparum 3D7 60S ribosomal protein L35ae, putative (PF3D7_1142600), partial mRNA blastn 798 492 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
19319362 19319362 PRJNA1086823_P_NODE_10696_length_266_cov_1.036269_g10579_i0 PRJNA1086823 10696 266 1.036269 2.75647554 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 307 4.7e-79   NTclustered gi|18076408|emb|AJ290926.2| 36329 g10579 i0 100 2.49624060150376 166 0 62 0 101 266 1 166 Plasmodium falciparum partial mRNA for early transcribed membrane protein 11.1 (etramp11.1) blastn 664 307 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
19319398 19319398 PRJNA1086823_P_NODE_12496_length_253_cov_0.866667_g12379_i0 PRJNA1086823 12496 253 0.866667 2.19266751 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 468 1.92e-127   NTclustered gi|124804187|ref|XM_001347892.1| 36329 g12379 i0 100 5.9802371541502 253 0 100 0 1 253 183 435 Plasmodium falciparum 3D7 ethanolamine kinase (PF3D7_1124600), partial mRNA blastn 1513 468 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
21870751 21870751 PRJNA1086823_P_NODE_7398_length_303_cov_1.260870_g7281_i0 PRJNA1086823 7398 303 1.26087 3.8204361 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 457 5.12e-124   NTclustered gi|124800696|ref|XM_001349500.1| 36329 g7281 i0 100 4.04620462046205 247 0 100 0 1 247 511 757 Plasmodium falciparum 3D7 EMP1-trafficking protein (PF3D7_0202200), partial mRNA blastn 1226 457 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;