RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1086823" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1086823 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
193683 193683 PRJNA1086823_P_NODE_13381_length_251_cov_0.876404_g13264_i0 PRJNA1086823 13381 251 0.876404 2.19977404 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 265 2.68e-66   NTclustered gi|2893358450|emb|OZ220742.1| 2651171 g13264 i0 86.179 83.3227091633466 246 32 98 2 1 245 249943 250187 MAG: Thermoanaerobaculia bacterium isolate 0db66e92-d31a-4200-8262-fff8455c21c0 genome assembly, chromosome: 1 blastn 20914 265 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
1017342 1017342 PRJNA1086823_P_NODE_8321_length_289_cov_1.592593_g8204_i0 PRJNA1086823 8321 289 1.592593 4.60259377 Acidobacterium 33973 Bacteria Bacteria 507 4.75e-139   NTclustered gi|470484216|ref|NR_076636.1| 33075 g8204 i0 98.27 102.643598615917 289 5 100 0 1 289 976 1264 Acidobacterium capsulatum strain 161 23S ribosomal RNA gene, complete sequence blastn 29664 512 0.990234375 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidobacterium Acidobacterium capsulatum
2744489 2744489 PRJNA1086823_P_NODE_18303_length_243_cov_0.917647_g18186_i0 PRJNA1086823 18303 243 0.917647 2.22988221 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 124 4.579999999999999e-24   NTclustered gi|310755849|gb|HQ213739.1| 194844 g18186 i0 98.571 30.8559670781893 70 1 29 0 1 70 433 502 Uncultured Acidobacteriaceae bacterium clone 4_O02 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 7498 124 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
6571568 6571568 PRJNA1086823_P_NODE_13126_length_252_cov_0.871508_g13009_i0 PRJNA1086823 13126 252 0.871508 2.19620016 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 126 1.3299999999999999e-24   NTclustered gi|2874254167|emb|OY970399.1| 171953 g13009 i0 96.154 11.0555555555556 78 2 31 1 1 77 669246 669169 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.6 genome assembly, chromosome: 1 blastn 2786 126 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
10397279 10397279 PRJNA1086823_P_NODE_8729_length_285_cov_1.452830_g8612_i0 PRJNA1086823 8729 285 1.45283 4.1405655 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 488 1.6899999999999999e-133   NTclustered gi|2874254108|emb|OY970193.1| 171953 g8612 i0 97.552 316.298245614035 286 5 99 2 2 285 1690519 1690804 MAG: uncultured Acidobacteriota bacterium isolate MFD09206.bin.1.42 genome assembly, chromosome: 1 blastn 90145 488 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
22694271 22694271 PRJNA1086823_P_NODE_16398_length_246_cov_0.901734_g16281_i0 PRJNA1086823 16398 246 0.901734 2.21826564 Bacteria 2 Bacteria Bacteria 193 1.25e-44   NTclustered gi|2874254049|emb|OY970373.1| 171953 g16281 i0 81.048 25.8252032520325 248 41 99 6 1 245 5979321 5979565 MAG: uncultured Acidobacteriota bacterium isolate MFD09368.bin.c.1 genome assembly, chromosome: 1 blastn 6353 193 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;