RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1086823" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA1086823 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4845453 4845453 PRJNA1086823_P_NODE_13184_length_251_cov_1.747191_g13067_i0 PRJNA1086823 13184 251 1.747191 4.38544941 root 1 Root_unresolved Root_unresolved 464 2.47e-126   NTclustered gi|1714003650|gb|MN243923.1| 3079 g13067 i0 100 100.115537848606 251 0 100 0 1 251 853 603 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 25129 464 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
12496205 12496205 PRJNA1086823_P_NODE_3230_length_427_cov_7.327684_g3113_i0 PRJNA1086823 3230 427 7.327684 31.28921068 Chlorophyta 3041 Plants Plants 54.7 0.011   NTclustered gi|44890112|gb|AY530156.1| 3047 g3113 i0 100 0.60655737704918 29 0 7 0 399 427 2406 2378 Dunaliella tertiolecta ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (rbcS2) gene, complete cds blastn 259 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella tertiolecta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;