RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1086823" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA1086823 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
193821 193821 PRJNA1086823_P_NODE_2901_length_448_cov_2.074667_g2784_i0 PRJNA1086823 2901 448 2.074667 9.29450816 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 693 0   NTclustered gi|2274983416|gb|OP038912.1| 5725 g2784 i0 94.643 16.4397321428571 448 23 100 1 1 448 1737 1291 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 7365 693 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
1017325 1017325 PRJNA1086823_P_NODE_4741_length_363_cov_5.389655_g4624_i0 PRJNA1086823 4741 363 5.389655 19.56444765 Tritrichomonas 5723 Parabasalia other_Eukaryota 640 5.779999999999999e-179   NTclustered gi|62466089|gb|AY886846.1| 5726 g4624 i0 99.155 98.8595041322314 355 3 98 0 9 363 1 355 Tritrichomonas muris clone 1-6 16S-like ribosomal RNA gene, partial sequence blastn 35886 640 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
10396960 10396960 PRJNA1086823_P_NODE_10309_length_269_cov_4.459184_g10192_i0 PRJNA1086823 10309 269 4.459184 11.99520496 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 344 3.6299999999999997e-90   NTclustered gi|2274983416|gb|OP038912.1| 5725 g10192 i0 89.781 39.0446096654275 274 20 100 8 1 269 355 85 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 10503 344 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
18045587 18045587 PRJNA1086823_P_NODE_4875_length_359_cov_6.227273_g4758_i0 PRJNA1086823 4875 359 6.227273 22.35591007 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 580 3.51e-161   NTclustered gi|2274983416|gb|OP038912.1| 5725 g4758 i0 95.822 12.7604456824513 359 15 100 0 1 359 813 1171 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 4581 580 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;