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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1086823" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA1086823 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
193640 193640 PRJNA1086823_P_NODE_11341_length_259_cov_1.634409_g11224_i0 PRJNA1086823 11341 259 1.634409 4.23311931 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 259 1.29e-64   NTclustered gi|2651357787|gb|PP174302.1| 1892891 g11224 i0 90.452 40.6525096525097 199 15 77 3 16 214 3954 4148 Amoebozoa sp. isolate 2M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10529 259 1 Eukaryota Amoebozoa             Amoebozoa sp.
193687 193687 PRJNA1086823_P_NODE_13561_length_251_cov_0.876404_g13444_i0 PRJNA1086823 13561 251 0.876404 2.19977404 Ripella platypodia 2047821 Discosea other_Eukaryota 429 8.99e-116   NTclustered gi|1269228378|gb|MF683503.1| 2047821 g13444 i0 97.61 100.792828685259 251 4 100 1 1 251 1510 1262 Ripella platypodia clone 26.10.41 18S ribosomal RNA gene, partial sequence blastn 25299 429 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
1468576 1468576 PRJNA1086823_P_NODE_8462_length_288_cov_1.255814_g8345_i0 PRJNA1086823 8462 288 1.255814 3.61674432 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 276 1.45e-69   NTclustered gi|300078498|gb|GU001160.1| 5755 g8345 i0 85.764 21.1388888888889 288 10 100 16 1 288 5438 5694 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6088 276 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15496316 15496316 PRJNA1086823_P_NODE_12573_length_252_cov_1.664804_g12456_i0 PRJNA1086823 12573 252 1.664804 4.19530608 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 466 6.89e-127   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g12456 i0 100 73.9285714285714 252 0 100 0 1 252 303 554 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 18630 466 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
15496604 15496604 PRJNA1086823_P_NODE_8733_length_285_cov_1.424528_g8616_i0 PRJNA1086823 8733 285 1.424528 4.0599048 Vannella septentrionalis 197531 Discosea other_Eukaryota 490 4.71e-134   NTclustered gi|300078499|gb|GU001161.1| 197531 g8616 i0 97.88 80.2456140350877 283 6 99 0 1 283 947 1229 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22870 490 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
18045460 18045460 PRJNA1086823_P_NODE_15655_length_247_cov_1.511494_g15538_i0 PRJNA1086823 15655 247 1.511494 3.73339018 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 433 6.82e-117   NTclustered gi|54306228|gb|AY626163.1| 297386 g15538 i0 98.381 100.611336032389 247 3 100 1 1 247 973 728 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 24851 433 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
23146096 23146096 PRJNA1086823_P_NODE_6239_length_325_cov_3.043651_g6122_i0 PRJNA1086823 6239 325 3.043651 9.89186575 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 579 1.1299999999999997e-160   NTclustered gi|507138087|gb|KC583131.1| 590481 g6122 i0 98.769 91.4707692307692 325 4 100 0 1 325 420 96 Uncultured Amoebozoa clone RS.01f.10m.23 18S ribosomal RNA gene, partial sequence blastn 29728 579 1 Eukaryota Amoebozoa             uncultured Amoebozoa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;