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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1085664" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1085664 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
193598 193598 PRJNA1085664_S_NODE_7261_length_319_cov_4.724638_g6842_i0 PRJNA1085664 7261 319 4.724638 15.07159522 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.03   NTclustered gi|1557394408|emb|LR031564.1| 45931 g6842 i0 100 0.0877742946708464 28 0 9 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
2744201 2744201 PRJNA1085664_S_NODE_14983_length_224_cov_6.756906_g14564_i0 PRJNA1085664 14983 224 6.756906 15.13546944 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g14564 i0 100 0.125 28 0 13 0 197 224 52 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
4020063 4020063 PRJNA1085664_S_NODE_15144_length_223_cov_2.255556_g14725_i0 PRJNA1085664 15144 223 2.255556 5.02988988 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g14725 i0 100 0.125560538116592 28 0 13 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
6571407 6571407 PRJNA1085664_S_NODE_17366_length_208_cov_10.206061_g16947_i0 PRJNA1085664 17366 208 10.206061 21.22860688 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.018   NTclustered gi|1557394408|emb|LR031564.1| 45931 g16947 i0 100 0.134615384615385 28 0 13 0 181 208 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23145790 23145790 PRJNA1085664_S_NODE_6499_length_335_cov_5.869863_g6080_i0 PRJNA1085664 6499 335 5.869863 19.66404105 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.032   NTclustered gi|1557394408|emb|LR031564.1| 45931 g6080 i0 100 0.0835820895522388 28 0 8 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;