RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1085664" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1085664 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9121156 9121156 PRJNA1085664_S_NODE_22788_length_184_cov_1.000000_g22369_i0 PRJNA1085664 22788 184 1 1.84 Mycoplasma wenyonii 65123 Bacteria Bacteria 224 3.139999999999999e-54   NTclustered gi|395455868|gb|CP003703.1| 1197325 g22369 i0 93.421 0.826086956521739 152 9 83 1 1 152 265012 264862 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 152 224 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
21870397 21870397 PRJNA1085664_S_NODE_28558_length_166_cov_1.178862_g28139_i0 PRJNA1085664 28558 166 1.178862 1.95691092 Mycoplasma wenyonii 65123 Bacteria Bacteria 263 5.9e-66   NTclustered gi|395455868|gb|CP003703.1| 1197325 g28139 i0 95.21 1.77710843373494 167 6 100 2 1 166 24126 24291 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 295 263 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;