RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1085664" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1085664 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1468171 1468171 PRJNA1085664_S_NODE_24822_length_177_cov_1.074627_g24403_i0 PRJNA1085664 24822 177 1.074627 1.90208979 Carlavirus latensdianthi 3427766 Viruses Viruses 58.4 3.21e-4   NTclustered gi|1995060321|gb|MN450069.1| 12164 g24403 i0 97.143 0.19774011299435 35 0 19 1 1 34 15 49 Carnation latent virus isolate KL, complete genome blastn 35 58.4 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
15496175 15496175 PRJNA1085664_S_NODE_18193_length_204_cov_1.490683_g17774_i0 PRJNA1085664 18193 204 1.490683 3.04099332 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.005   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g17774 i0 100 0.279411764705882 29 0 14 0 1 29 6 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
18045322 18045322 PRJNA1085664_S_NODE_36635_length_151_cov_0.870370_g36216_i0 PRJNA1085664 36635 151 0.87037 1.3142587 Pestivirus bovis 3052619 Viruses Viruses 230 5.299999999999999e-56   NTclustered gi|972905812|gb|KU200260.1| 11099 g36216 i0 94.04 93.6291390728477 151 9 100 0 1 151 8809 8959 Bovine viral diarrhea virus 1, partial genome blastn 14138 230 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
18868989 18868989 PRJNA1085664_S_NODE_6755_length_330_cov_1.637631_g6336_i0 PRJNA1085664 6755 330 1.637631 5.4041823 Pestivirus 11095 Viruses Viruses 584 2.48e-162   NTclustered gi|2672396898|gb|PP277983.1| 11099 g6336 i0 98.78 52.4212121212121 328 4 99 0 1 328 10047 9720 Bovine viral diarrhea virus 1 isolate NX2023, complete genome blastn 17299 584 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
19319349 19319349 PRJNA1085664_S_NODE_7376_length_317_cov_3.281022_g6957_i0 PRJNA1085664 7376 317 3.281022 10.40083974 Jujube closterovirus 1 3043313 Viruses Viruses 58.4 6.38e-4   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g6957 i0 100 0.0977917981072555 31 0 10 0 1 31 8 38 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 31 58.4 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
20143699 20143699 PRJNA1085664_S_NODE_12656_length_244_cov_2.034826_g12237_i0 PRJNA1085664 12656 244 2.034826 4.96497544 Pestivirus 11095 Viruses Viruses 442 1.1199999999999994e-119   NTclustered gi|1093530907|gb|KT943518.1| 11099 g12237 i0 99.587 49.7377049180328 242 1 99 0 3 244 8195 7954 Bovine viral diarrhea virus 1 isolate BJ1201, complete genome blastn 12136 446 0.991031390134529 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;