RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1085664" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 1 ✖

bioproject 1

  • PRJNA1085664 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2744251 2744251 PRJNA1085664_S_NODE_25983_length_173_cov_1.823077_g25564_i0 PRJNA1085664 25983 173 1.823077 3.15392321 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 54.7 0.004   NTclustered gi|2733867141|gb|PP812520.1| 440571 g25564 i0 96.875 0.670520231213873 32 1 18 0 142 173 105 74 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 116 54.7 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;