RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1082072" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1082072 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18044924 18044924 PRJNA1082072_P_NODE_1115_length_327_cov_1.161417_g1108_i0 PRJNA1082072 1115 327 1.161417 3.79783359 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 137 8.25e-28   NTclustered gi|150984457|gb|EF634871.1| 452809 g1108 i0 81.395 16.0366972477064 172 28 52 3 2 171 160 329 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 5244 137 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
21419205 21419205 PRJNA1082072_P_NODE_1777_length_271_cov_1.146465_g1770_i0 PRJNA1082072 1777 271 1.146465 3.10692015 Metazoa 33208 Nematoda Nematoda 243 1.37e-59   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g1770 i0 83.459 159.575645756458 266 38 98 5 3 265 175 437 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 43245 243 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;