RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1082072" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1082072 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9120802 9120802 PRJNA1082072_P_NODE_2268_length_249_cov_0.875000_g2261_i0 PRJNA1082072 2268 249 0.875 2.17875 Apteryx mantelli 2696672 Chordata Chordata 52.8 0.023   NTclustered gi|840008844|emb|LK064627.1| 202946 g2261 i0 100 0.112449799196787 28 0 11 0 127 154 1730660 1730633 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold25 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
11220600 11220600 PRJNA1082072_P_NODE_2169_length_250_cov_0.870056_g2162_i0 PRJNA1082072 2169 250 0.870056 2.17514 Aves 8782 Chordata Chordata 124 4.729999999999999e-24   NTclustered gi|2583782972|ref|XM_059826112.1| 37040 g2162 i0 77.273 42.612 220 44 87 5 34 250 175 391 PREDICTED: Gavia stellata ribosomal protein L27a (RPL27A), mRNA blastn 10653 124 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gaviiformes Gaviidae Gavia Gavia stellata
19318916 19318916 PRJNA1082072_P_NODE_1216_length_314_cov_1.257261_g1209_i0 PRJNA1082072 1216 314 1.257261 3.94779954 Diceros bicornis 9805 Chordata Chordata 161 4.68e-35   NTclustered gi|2555101640|ref|XM_058537544.1| 77932 g1209 i0 79.098 51.3343949044586 244 43 76 7 48 287 101 340 PREDICTED: Diceros bicornis minor eukaryotic translation elongation factor 2 (EEF2), mRNA blastn 16119 161 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Rhinocerotidae Diceros Diceros bicornis
21419204 21419204 PRJNA1082072_P_NODE_1557_length_282_cov_1.842105_g1550_i0 PRJNA1082072 1557 282 1.842105 5.1947361 Artiodactyla 91561 Chordata Chordata 54.7 0.007   NTclustered gi|2782113514|ref|XM_059043140.2| 27615 g1550 i0 100 0.50354609929078 29 0 10 0 128 156 194 222 PREDICTED: Kogia breviceps collagen triple helix repeat containing 1 (CTHRC1), mRNA blastn 142 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Kogia Kogia breviceps

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;