RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1082072" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1082072 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12946911 12946911 PRJNA1082072_P_NODE_1311_length_303_cov_1.339130_g1304_i0 PRJNA1082072 1311 303 1.33913 4.0575639 Cryptococcus neoformans 5207 Fungi Fungi 274 5.53e-69   NTclustered gi|799318120|ref|XM_012191959.1| 235443 g1304 i0 83.972 88.2178217821782 287 44 94 2 12 297 170 455 Cryptococcus neoformans var. grubii H99 peptidyl-prolyl cis-trans isomerase (CNAG_03627), mRNA blastn 26730 274 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus neoformans
18868809 18868809 PRJNA1082072_P_NODE_1435_length_289_cov_1.615741_g1428_i0 PRJNA1082072 1435 289 1.615741 4.66949149 Malassezia 55193 Fungi Fungi 534 2.18e-147   NTclustered gi|1101565238|gb|KX808622.1| 55194 g1428 i0 100 100 289 0 100 0 1 289 521 233 Malassezia furfur isolate GDMUZJ2015046 26S ribosomal RNA gene, partial sequence blastn 28900 534 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia furfur
18868812 18868812 PRJNA1082072_P_NODE_2575_length_246_cov_0.890173_g2568_i0 PRJNA1082072 2575 246 0.890173 2.18982558 Opisthokonta 33154 Fungi Fungi 56.5 0.002   NTclustered gi|758986219|ref|XM_011393769.1| 5270 g2568 i0 96.97 0.5 33 1 13 0 165 197 515 547 Mycosarcoma maydis uncharacterized protein (UMAG_05376), partial mRNA blastn 123 56.5 1 Eukaryota Opisthokonta Fungi Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Mycosarcoma Mycosarcoma maydis
21869994 21869994 PRJNA1082072_P_NODE_1058_length_335_cov_1.061069_g1051_i0 PRJNA1082072 1058 335 1.061069 3.55458115 Vanrija albida 181172 Fungi Fungi 156 2.34e-33   NTclustered gi|2837736828|ref|XM_069354983.1| 181172 g1051 i0 77.481 16.044776119403 262 57 78 2 75 335 1146 886 Vanrija albida methionine adenosyltransferase sam2 (SAM2), partial mRNA blastn 5375 156 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Trichosporonales Trichosporonaceae Vanrija Vanrija albida
21869998 21869998 PRJNA1082072_P_NODE_1918_length_260_cov_1.647059_g1911_i0 PRJNA1082072 1918 260 1.647059 4.2823534 Malassezia restricta 76775 Fungi Fungi 459 1.19e-124   NTclustered gi|1546636549|ref|XM_027629917.1| 76775 g1911 i0 98.462 1 260 4 100 0 1 260 512 253 Malassezia restricta zinc finger protein (MRET_3290), partial mRNA blastn 260 459 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
23145357 23145357 PRJNA1082072_P_NODE_1359_length_297_cov_1.375000_g1352_i0 PRJNA1082072 1359 297 1.375 4.08375 Pleurotus tuber-regium 716892 Fungi Fungi 158 5.68e-34   NTclustered gi|2067515833|gb|MW625949.1| 716892 g1352 i0 87.591 20.4444444444444 137 15 46 2 161 296 1310 1175 Pleurotus tuber-regium elongation factor 1-alpha mRNA, complete cds blastn 6072 158 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Pleurotaceae Pleurotus Pleurotus tuber-regium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;