RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1082072" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1082072 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2292519 2292519 PRJNA1082072_P_NODE_1042_length_337_cov_1.166667_g1035_i0 PRJNA1082072 1042 337 1.166667 3.93166779 Staphylococcus 1279 Bacteria Bacteria 623 5.369999999999999e-174   NTclustered gi|443907020|gb|KC329827.1| 1282 g1035 i0 100 163.967359050445 337 0 100 0 1 337 475 139 Staphylococcus epidermidis strain 14F 16S ribosomal RNA gene, partial sequence blastn 55257 623 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
25243512 25243512 PRJNA1082072_P_NODE_900_length_354_cov_1.096085_g893_i0 PRJNA1082072 900 354 1.096085 3.8801409 Staphylococcus 1279 Bacteria Bacteria 189 2.45e-43   NTclustered gi|2894814215|gb|CP178526.1| 1292 g893 i0 79.286 79.0423728813559 280 50 78 7 70 345 1073843 1074118 Staphylococcus warneri strain X5R13 chromosome, complete genome blastn 27981 189 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus warneri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;