RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1082072" and tax_clade = "FCB group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1082072 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
193178 193178 PRJNA1082072_P_NODE_1641_length_278_cov_1.395122_g1634_i0 PRJNA1082072 1641 278 1.395122 3.87843916 Hwangdonia lutea 3075823 Bacteria Bacteria 73.1 1.96e-8   NTclustered gi|2593228480|gb|CP136521.1| 3075823 g1634 i0 85.333 17.0323741007194 75 6 27 2 66 135 3510423 3510497 Hwangdonia lutea strain SCSIO 19198 chromosome, complete genome blastn 4735 73.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Hwangdonia Hwangdonia lutea
193180 193180 PRJNA1082072_P_NODE_1841_length_266_cov_1.373057_g1834_i0 PRJNA1082072 1841 266 1.373057 3.65233162 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 54.7 0.007   NTclustered gi|2874253728|emb|OY969570.1| 412054 g1834 i0 100 0.109022556390977 29 0 11 0 229 257 155165 155193 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
4019746 4019746 PRJNA1082072_P_NODE_1804_length_268_cov_1.579487_g1797_i0 PRJNA1082072 1804 268 1.579487 4.23302516 Flavobacterium sp. N502540 2986838 Bacteria Bacteria 52.8 0.025   NTclustered gi|2324023906|gb|CP110012.1| 2986838 g1797 i0 100 0.104477611940299 28 0 10 0 63 90 4414508 4414535 Flavobacterium sp. N502540 chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. N502540
6571093 6571093 PRJNA1082072_P_NODE_2926_length_241_cov_0.916667_g2919_i0 PRJNA1082072 2926 241 0.916667 2.20916747 Aquimarina sp. AD1 1714848 Bacteria Bacteria 54.7 0.006   NTclustered gi|1468728722|gb|CP031966.1| 1714848 g2919 i0 100 0.120331950207469 29 0 12 0 53 81 2762799 2762771 Aquimarina sp. AD1 chromosome, complete genome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aquimarina Aquimarina sp. AD1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;