RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA1078753 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10395897 10395897 PRJNA1078753_P_NODE_32109_length_248_cov_0.880000_g31913_i0 PRJNA1078753 32109 248 0.88 2.1824 Methanococcus voltae 2188 Archaea Archaea 56.5 0.002   NTclustered gi|2891705001|gb|CP178160.1| 523842 g31913 i0 97.059 0.42741935483871 34 0 13 1 170 202 191348 191381 Methanococcus voltae PS chromosome, complete genome blastn 106 56.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus voltae
23144713 23144713 PRJNA1078753_P_NODE_20459_length_276_cov_2.290640_g20263_i0 PRJNA1078753 20459 276 2.29064 6.3221664 Methanoculleus palmolei 72612 Archaea Archaea 52.8 0.025   NTclustered gi|2618162486|gb|CP137641.1| 72612 g20263 i0 100 0.101449275362319 28 0 10 0 229 256 1495716 1495689 Methanoculleus palmolei strain DSM 4273 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus palmolei
23144808 23144808 PRJNA1078753_P_NODE_33999_length_247_cov_0.885057_g33803_i0 PRJNA1078753 33999 247 0.885057 2.18609079 Halalkalicoccus jeotgali 413810 Archaea Archaea 202 2.0899999999999999e-47   NTclustered gi|299123054|gb|CP002062.1| 795797 g33803 i0 83.721 0.870445344129555 215 34 87 1 33 247 1247408 1247195 Halalkalicoccus jeotgali B3, complete genome blastn 215 202 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;