RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1078753 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
192684 192684 PRJNA1078753_P_NODE_44481_length_209_cov_4.058824_g44285_i0 PRJNA1078753 44481 209 4.058824 8.48294216 Arcella discoides 1078856 Tubulinea other_Eukaryota 195 2.88e-45   NTclustered gi|345452546|gb|JF694291.1| 1078856 g44285 i0 86.264 62.2535885167464 182 22 86 3 1 180 709 529 Arcella discoides isolate DL3_98 clone 5 actin gene, partial cds blastn 13011 195 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella discoides
2743411 2743411 PRJNA1078753_P_NODE_6003_length_434_cov_6.800554_g5807_i0 PRJNA1078753 6003 434 6.800554 29.51440436 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 329 1.73e-85   NTclustered gi|511487963|gb|JX898537.1| 1260765 g5807 i0 83.646 37.9308755760369 373 38 83 17 74 432 1 364 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 16462 329 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
2743418 2743418 PRJNA1078753_P_NODE_6783_length_412_cov_15.587021_g6587_i0 PRJNA1078753 6783 412 15.587021 64.21852652 Saccamoeba sp. W187G 1215626 Tubulinea other_Eukaryota 750 0   NTclustered gi|399764209|gb|JQ271720.1| 1215626 g6587 i0 99.515 94.5291262135922 412 2 100 0 1 412 721 1132 Saccamoeba sp. W187G 18S ribosomal RNA gene, partial sequence blastn 38946 750 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. W187G
9945145 9945145 PRJNA1078753_P_NODE_3928_length_518_cov_1.604494_g3734_i0 PRJNA1078753 3928 518 1.604494 8.31127892 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 941 0   NTclustered gi|399764274|gb|JQ271785.1| 1215994 g3734 i0 99.421 38.6003861003861 518 3 100 0 1 518 278 795 Tubulinea group 04 sp. BCHM5 18S ribosomal RNA gene, partial sequence blastn 19995 946 0.994714587737844 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. BCHM5
16319410 16319410 PRJNA1078753_P_NODE_2673_length_609_cov_21.001866_g2482_i0 PRJNA1078753 2673 609 21.001866 127.90136394 Saccamoeba 136463 Tubulinea other_Eukaryota 1075 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g2482 i0 98.522 83.3300492610837 609 9 100 0 1 609 1783 1175 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 50748 1075 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
18044305 18044305 PRJNA1078753_P_NODE_255_length_1594_cov_24.317554_g187_i2 PRJNA1078753 255 1594 24.317554 387.62181076 Copromyxa protea 931554 Tubulinea other_Eukaryota 780 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g187 i2 77.19 7.17252195734002 1381 287 85 22 208 1565 1376 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 11433 780 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;