RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1078753 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11220427 11220427 PRJNA1078753_P_NODE_4249_length_501_cov_1.282710_g4053_i0 PRJNA1078753 4249 501 1.28271 6.4263771 Adineta 104781 Rotifera other_Eukaryota 869 0   NTclustered gi|72153731|gb|DQ089739.1| 104782 g4053 i0 98.384 46.9740518962076 495 7 99 1 1 494 1523 2017 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 23534 869 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
16769523 16769523 PRJNA1078753_P_NODE_26274_length_253_cov_1.644444_g26078_i0 PRJNA1078753 26274 253 1.644444 4.16044332 Habrotrocha bidens 468652 Rotifera other_Eukaryota 468 1.92e-127   NTclustered gi|2537903793|gb|KM043258.2| 468652 g26078 i0 100 100.083003952569 253 0 100 0 1 253 144 396 Habrotrocha bidens voucher HB002 18S ribosomal RNA gene, partial sequence blastn 25321 468 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha bidens
18868459 18868459 PRJNA1078753_P_NODE_18275_length_286_cov_1.117371_g18079_i0 PRJNA1078753 18275 286 1.117371 3.19568106 Philodinida 104783 Rotifera other_Eukaryota 518 2.17e-142   NTclustered gi|2537903793|gb|KM043258.2| 468652 g18079 i0 99.301 98.1013986013986 286 2 100 0 1 286 617 902 Habrotrocha bidens voucher HB002 18S ribosomal RNA gene, partial sequence blastn 28057 518 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha bidens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;