RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1078753 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19318170 19318170 PRJNA1078753_P_NODE_15316_length_304_cov_1.272727_g15120_i0 PRJNA1078753 15316 304 1.272727 3.86909008 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 56.5 0.002   NTclustered gi|2806457882|ref|XM_068492248.1| 1144522 g15120 i0 100 0.703947368421053 30 0 10 0 170 199 768 797 Tritrichomonas foetus uncharacterized protein (TRFO_05031), partial mRNA blastn 214 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
21869223 21869223 PRJNA1078753_P_NODE_12318_length_330_cov_1.198444_g12122_i0 PRJNA1078753 12318 330 1.198444 3.9548652 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 63.9 1.44e-5   NTclustered gi|2806467651|ref|XM_068506877.1| 1144522 g12122 i0 97.297 2.07272727272727 37 1 11 0 291 327 509 473 Tritrichomonas foetus uncharacterized protein (TRFO_29613), partial mRNA blastn 684 63.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;