contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_phylum = "Oomycota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4844995 | 4844995 | PRJNA1078753_P_NODE_26384_length_253_cov_1.283333_g26188_i0 | PRJNA1078753 | 26384 | 253 | 1.283333 | 3.24683249 | Saprolegnia | 4769 | SAR_Eukaryotes | SAR_Eukaryotes | 100 | 8.08e-17 | NTclustered | gi|813174578|ref|XM_012349556.1| | 695850 | g26188 | i0 | 81.452 | 0.980237154150198 | 124 | 21 | 49 | 2 | 10 | 132 | 121 | 243 | Saprolegnia parasitica CBS 223.65 60S ribosomal protein L27a mRNA | blastn | 248 | 100 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 9120152 | 9120152 | PRJNA1078753_P_NODE_25068_length_258_cov_1.470270_g24872_i0 | PRJNA1078753 | 25068 | 258 | 1.47027 | 3.7932966 | Phytophthora nicotianae | 4792 | SAR_Eukaryotes | SAR_Eukaryotes | 117 | 8.2100000000000005e-22 | NTclustered | gi|675208352|ref|XM_008914813.1| | 761204 | g24872 | i0 | 79.874 | 8.72480620155039 | 159 | 32 | 62 | 0 | 1 | 159 | 284 | 126 | Phytophthora parasitica INRA-310 ribonucleoprotein-associated protein mRNA | blastn | 2251 | 117 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora nicotianae | ||
| 14221147 | 14221147 | PRJNA1078753_P_NODE_10972_length_344_cov_1.420664_g10776_i0 | PRJNA1078753 | 10972 | 344 | 1.420664 | 4.88708416 | Paralagenidium karlingii | 1440115 | SAR_Eukaryotes | SAR_Eukaryotes | 137 | 8.729999999999999e-28 | NTclustered | gi|2554484921|ref|NC_080886.1| | 1440115 | g10776 | i0 | 89.815 | 33.1279069767442 | 108 | 10 | 31 | 1 | 101 | 207 | 41659 | 41766 | Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome | blastn | 11396 | 137 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Paralagenidium | Paralagenidium karlingii | ||||
| 15495119 | 15495119 | PRJNA1078753_P_NODE_18873_length_283_cov_1.466667_g18677_i0 | PRJNA1078753 | 18873 | 283 | 1.466667 | 4.15066761 | Phytophthora nicotianae | 4792 | SAR_Eukaryotes | SAR_Eukaryotes | 124 | 5.46e-24 | NTclustered | gi|675169594|ref|XM_008895434.1| | 761204 | g18677 | i0 | 81.41 | 3.50883392226148 | 156 | 25 | 54 | 3 | 130 | 283 | 525 | 372 | Phytophthora parasitica INRA-310 40S ribosomal protein S16 mRNA | blastn | 993 | 124 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora nicotianae | ||
| 16769682 | 16769682 | PRJNA1078753_P_NODE_5614_length_447_cov_3.227273_g5418_i0 | PRJNA1078753 | 5614 | 447 | 3.227273 | 14.42591031 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 350 | 1.37e-91 | NTclustered | gi|2795029237|ref|XM_067937609.1| | 4785 | g5418 | i0 | 83.161 | 75.8076062639821 | 386 | 61 | 86 | 4 | 64 | 447 | 31 | 414 | Phytophthora cinnamomi 40S ribosomal protein S14 (IUM83_12961), partial mRNA | blastn | 33886 | 350 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 17594805 | 17594805 | PRJNA1078753_P_NODE_6034_length_433_cov_6.050000_g5838_i0 | PRJNA1078753 | 6034 | 433 | 6.05 | 26.1965 | Phytophthora | 4783 | SAR_Eukaryotes | SAR_Eukaryotes | 305 | 2.91e-78 | NTclustered | gi|2795029237|ref|XM_067937609.1| | 4785 | g5838 | i0 | 81.72 | 79.9099307159353 | 372 | 62 | 85 | 5 | 1 | 369 | 399 | 31 | Phytophthora cinnamomi 40S ribosomal protein S14 (IUM83_12961), partial mRNA | blastn | 34601 | 305 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 20593753 | 20593753 | PRJNA1078753_P_NODE_7577_length_394_cov_2.242991_g7381_i0 | PRJNA1078753 | 7577 | 394 | 2.242991 | 8.83738454 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 387 | 9.1e-103 | NTclustered | gi|195970350|gb|EU880228.1| | 67593 | g7381 | i0 | 87.463 | 85.3984771573604 | 335 | 42 | 85 | 0 | 6 | 340 | 353 | 19 | Phytophthora sojae calmodulin (CAM1) mRNA, complete cds | blastn | 33647 | 387 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 23144732 | 23144732 | PRJNA1078753_P_NODE_2319_length_650_cov_2.150780_g2131_i0 | PRJNA1078753 | 2319 | 650 | 2.15078 | 13.98007 | Phytophthora nicotianae | 4792 | SAR_Eukaryotes | SAR_Eukaryotes | 54.7 | 0.018 | NTclustered | gi|675214874|ref|XM_008918074.1| | 761204 | g2131 | i0 | 96.875 | 0.0984615384615385 | 32 | 1 | 5 | 0 | 352 | 383 | 119 | 88 | Phytophthora parasitica INRA-310 hypothetical protein partial mRNA | blastn | 64 | 54.7 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora nicotianae | ||
| 23144776 | 23144776 | PRJNA1078753_P_NODE_30019_length_249_cov_1.312500_g29823_i0 | PRJNA1078753 | 30019 | 249 | 1.3125 | 3.268125 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 222 | 1.62e-53 | NTclustered | gi|2795016949|ref|XM_067930458.1| | 4785 | g29823 | i0 | 83.682 | 83.2730923694779 | 239 | 35 | 95 | 4 | 11 | 247 | 927 | 691 | Phytophthora cinnamomi protein transporter Sec61 subunit alpha isoform 2 (IUM83_06269), partial mRNA | blastn | 20735 | 222 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;