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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1078753 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
192550 192550 PRJNA1078753_P_NODE_31241_length_249_cov_0.875000_g31045_i0 PRJNA1078753 31241 249 0.875 2.17875 Strongyloides ratti 34506 Nematoda Nematoda 167 7.709999999999999e-37   NTclustered gi|1376151971|ref|XM_024644498.1| 34506 g31045 i0 80.088 3.79518072289157 226 43 90 2 25 249 312 88 Strongyloides ratti Histone H4 family and Histone core domain and Histone-fold domain-containing protein (SRAE_X000018400), partial mRNA blastn 945 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
1467218 1467218 PRJNA1078753_P_NODE_38142_length_244_cov_0.900585_g37946_i0 PRJNA1078753 38142 244 0.900585 2.1974274 Strongyloides ratti 34506 Nematoda Nematoda 150 7.589999999999999e-32   NTclustered gi|1376157525|ref|XM_024646217.1| 34506 g37946 i0 86.667 48.0491803278689 135 18 55 0 2 136 231 97 Strongyloides ratti 26S proteasome non-ATPase regulatory subunit 14 (SRAE_0000034000), partial mRNA blastn 11724 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
5295383 5295383 PRJNA1078753_P_NODE_3265_length_558_cov_6.694845_g3072_i0 PRJNA1078753 3265 558 6.694845 37.3572351 Strongyloides ratti 34506 Nematoda Nematoda 464 5.96e-126   NTclustered gi|1376149319|ref|XM_024642975.1| 34506 g3072 i0 83.603 78.7795698924731 494 81 89 0 65 558 1131 638 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_2000414100), partial mRNA blastn 43959 464 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
15495359 15495359 PRJNA1078753_P_NODE_8033_length_385_cov_2.929487_g7837_i0 PRJNA1078753 8033 385 2.929487 11.27852495 Pristionchus sp. 13 RS5231 452807 Nematoda Nematoda 82.4 4.69e-11   NTclustered gi|150982219|gb|EF634698.1| 452807 g7837 i0 87.324 1.03636363636364 71 9 18 0 16 86 1 71 Pristionchus sp. 13 RS5231 large subunit ribosomal protein 29 (rpl-29) mRNA, complete cds blastn 399 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 13 RS5231
16769407 16769407 PRJNA1078753_P_NODE_1234_length_859_cov_11.353690_g1080_i0 PRJNA1078753 1234 859 11.35369 97.5281971 Strongyloides ratti 34506 Nematoda Nematoda 798 0   NTclustered gi|1376149319|ref|XM_024642975.1| 34506 g1080 i0 84.818 89.5064027939464 797 117 93 4 1 795 337 1131 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_2000414100), partial mRNA blastn 76886 798 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
19318227 19318227 PRJNA1078753_P_NODE_22276_length_269_cov_1.540816_g22080_i0 PRJNA1078753 22276 269 1.540816 4.14479504 Aphelenchoides besseyi 269767 Nematoda Nematoda 497 2.63e-136   NTclustered gi|1153118091|gb|KY123696.1| 269767 g22080 i0 100 96.2118959107807 269 0 100 0 1 269 754 486 Aphelenchoides besseyi isolate DJ18S clone 4 28S ribosomal RNA gene, partial sequence blastn 25881 497 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
19318464 19318464 PRJNA1078753_P_NODE_9356_length_364_cov_1.470790_g9160_i0 PRJNA1078753 9356 364 1.47079 5.3536756 Caenorhabditis remanei 31234 Nematoda Nematoda 54.7 0.01   NTclustered gi|2445392365|ref|XM_053735414.1| 31234 g9160 i0 100 0.0796703296703297 29 0 8 0 25 53 905 877 Caenorhabditis remanei uncharacterized protein (GCK72_023494), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
21869210 21869210 PRJNA1078753_P_NODE_11098_length_342_cov_6.457249_g10902_i0 PRJNA1078753 11098 342 6.457249 22.08379158 Strongyloides papillosus 174720 Nematoda Nematoda 244 4.9699999999999996e-60   NTclustered gi|690022274|emb|LM530102.1| 174720 g10902 i0 85.965 98.8654970760234 228 32 67 0 98 325 228 1 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0004347 blastn 33812 244 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;