RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1078753 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2743285 2743285 PRJNA1078753_P_NODE_30923_length_249_cov_0.875000_g30727_i0 PRJNA1078753 30923 249 0.875 2.17875 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 145 3.61e-30   NTclustered gi|575456455|gb|CP007128.1| 861299 g30727 i0 78.632 1.17269076305221 234 39 92 7 1 228 5051843 5052071 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 292 145 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
5295276 5295276 PRJNA1078753_P_NODE_1725_length_737_cov_2.001506_g1549_i0 PRJNA1078753 1725 737 2.001506 14.75109922 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 891 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g1549 i0 88.636 179.712347354138 748 64 100 17 1 737 3042360 3043097 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 132448 891 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
6570420 6570420 PRJNA1078753_P_NODE_18606_length_284_cov_1.886256_g18410_i0 PRJNA1078753 18606 284 1.886256 5.35696704 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 291 5.1000000000000005e-74   NTclustered gi|2874253789|emb|OY969773.1| 412054 g18410 i0 85.614 3 285 32 99 9 4 284 602580 602301 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 852 291 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7845114 7845114 PRJNA1078753_P_NODE_12207_length_331_cov_1.406977_g12011_i0 PRJNA1078753 12207 331 1.406977 4.65709387 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 403 7.47e-108   NTclustered gi|575456455|gb|CP007128.1| 861299 g12011 i0 89.058 95.0574018126888 329 31 99 5 4 331 3042535 3042859 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 31464 403 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
7845185 7845185 PRJNA1078753_P_NODE_22427_length_269_cov_0.857143_g22231_i0 PRJNA1078753 22427 269 0.857143 2.30571467 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 381 2.7699999999999995e-101   NTclustered gi|2874253789|emb|OY969773.1| 412054 g22231 i0 92.251 236.490706319703 271 17 100 4 1 269 421359 421627 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 63616 381 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;