RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA1078753 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
192468 192468 PRJNA1078753_P_NODE_20281_length_277_cov_1.509804_g20085_i0 PRJNA1078753 20281 277 1.509804 4.18215708 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 252 2.34e-62   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g20085 i0 83.154 89.5090252707581 279 43 100 4 1 277 279 3 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 24794 252 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1467025 1467025 PRJNA1078753_P_NODE_11542_length_337_cov_16.530303_g11346_i0 PRJNA1078753 11542 337 16.530303 55.70712111 Vannella septentrionalis 197531 Discosea other_Eukaryota 436 7.509999999999999e-118   NTclustered gi|300078499|gb|GU001161.1| 197531 g11346 i0 90.208 46.8278931750742 337 29 99 3 3 337 4342 4008 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15781 436 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
5295439 5295439 PRJNA1078753_P_NODE_4025_length_513_cov_1.197727_g3831_i0 PRJNA1078753 4025 513 1.197727 6.14433951 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 272 3.54e-68   NTclustered gi|470482135|ref|XM_004367421.1| 1257118 g3831 i0 77.754 61.1539961013645 463 89 89 11 57 512 2022 1567 Acanthamoeba castellanii str. Neff heat shock protein 90 alpha, putative (ACA1_205910), partial mRNA blastn 31372 272 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10395811 10395811 PRJNA1078753_P_NODE_21769_length_271_cov_1.550505_g21573_i0 PRJNA1078753 21769 271 1.550505 4.20186855 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.002   NTclustered gi|470476036|ref|XM_004342168.1| 1257118 g21573 i0 100 0.527675276752767 30 0 11 0 62 91 556 527 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_115170), partial mRNA blastn 143 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11671398 11671398 PRJNA1078753_P_NODE_6990_length_407_cov_5.164671_g6794_i0 PRJNA1078753 6990 407 5.164671 21.02021097 Vannella septentrionalis 197531 Discosea other_Eukaryota 688 0   NTclustered gi|300078499|gb|GU001161.1| 197531 g6794 i0 97.066 102.34398034398 409 10 100 2 1 407 3821 3413 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 41654 688 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
14221217 14221217 PRJNA1078753_P_NODE_20692_length_275_cov_2.287129_g20496_i0 PRJNA1078753 20692 275 2.287129 6.28960475 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 99 3.2e-16   NTclustered gi|470526295|ref|XM_004356679.1| 1257118 g20496 i0 85.263 13.4327272727273 95 14 35 0 101 195 2369 2275 Acanthamoeba castellanii str. Neff vacuolar proton ATPase, putative (ACA1_175060), partial mRNA blastn 3694 99 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18868467 18868467 PRJNA1078753_P_NODE_19015_length_283_cov_0.961905_g18819_i0 PRJNA1078753 19015 283 0.961905 2.72219115 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 202 2.4499999999999998e-47   NTclustered gi|470466676|ref|XM_004341684.1| 1257118 g18819 i0 79.861 96.8445229681979 288 48 100 8 1 283 440 722 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_198710), partial mRNA blastn 27407 202 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20593654 20593654 PRJNA1078753_P_NODE_3357_length_552_cov_12.501044_g3163_i0 PRJNA1078753 3357 552 12.501044 69.00576288 Vannella sp. LITHOV 1215650 Discosea other_Eukaryota 974 0   NTclustered gi|399764235|gb|JQ271746.1| 1215650 g3163 i0 98.553 99.0869565217391 553 5 100 3 1 552 592 42 Vannella sp. LITHOV 18S ribosomal RNA gene, partial sequence blastn 54696 974 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. LITHOV
24418368 24418368 PRJNA1078753_P_NODE_16600_length_294_cov_1.868778_g16404_i0 PRJNA1078753 16600 294 1.868778 5.49420732 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 150 9.399999999999999e-32   NTclustered gi|470526398|ref|XM_004356698.1| 1257118 g16404 i0 78.298 1.67006802721088 235 49 80 2 53 286 52 285 Acanthamoeba castellanii str. Neff cytochrome c, putative (ACA1_175250), partial mRNA blastn 491 150 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24418393 24418393 PRJNA1078753_P_NODE_2020_length_690_cov_15.403566_g1840_i0 PRJNA1078753 2020 690 15.403566 106.2846054 Cochliopodium minus 313997 Discosea other_Eukaryota 939 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g1840 i0 94.212 47.2246376811594 622 22 89 11 77 690 4 619 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 32585 939 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
24418594 24418594 PRJNA1078753_P_NODE_480_length_1290_cov_7.463435_g372_i0 PRJNA1078753 480 1290 7.463435 96.2783115 Cochliopodium minus 313997 Discosea other_Eukaryota 1834 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g372 i0 92.629 52.6170542635659 1316 29 99 42 5 1290 826 2103 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 67876 1834 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;