RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA1078753 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
192465 192465 PRJNA1078753_P_NODE_19721_length_279_cov_2.485437_g19525_i0 PRJNA1078753 19721 279 2.485437 6.93436923 Thaumatomonas seravini 188939 SAR_Eukaryotes SAR_Eukaryotes 505 1.6399999999999995e-138   NTclustered gi|161015724|gb|EF681958.1| 188939 g19525 i0 99.286 100.272401433692 280 1 100 1 1 279 711 990 Thaumatomonas seravini strain HFCC58 28S ribosomal RNA gene, partial sequence blastn 27976 505 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas seravini
192553 192553 PRJNA1078753_P_NODE_31361_length_248_cov_5.274286_g31165_i0 PRJNA1078753 31361 248 5.274286 13.08022928 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 174 4.59e-39   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g31165 i0 80.081 23.5120967741935 246 40 99 8 1 246 3764 4000 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 5831 174 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
4019008 4019008 PRJNA1078753_P_NODE_15504_length_302_cov_3.161572_g15308_i0 PRJNA1078753 15504 302 3.161572 9.54794744 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 492 1.4e-134   NTclustered gi|88792583|gb|DQ386164.1| 372086 g15308 i0 96.053 102.284768211921 304 9 100 2 1 302 2480 2782 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 30890 492 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
5295514 5295514 PRJNA1078753_P_NODE_8305_length_380_cov_10.312704_g8109_i0 PRJNA1078753 8305 380 10.312704 39.1882752 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 411 5.189999999999999e-110   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g8109 i0 87.234 54.9473684210526 376 28 98 11 9 380 4018 3659 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 20880 411 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
10395999 10395999 PRJNA1078753_P_NODE_5209_length_461_cov_3.610825_g5013_i0 PRJNA1078753 5209 461 3.610825 16.64590325 Cholamonas cyrtodiopsidis 507873 SAR_Eukaryotes SAR_Eukaryotes 398 4.989999999999998e-106   NTclustered gi|238617578|gb|FJ973424.1| 507873 g5013 i0 82.353 94.9132321041215 459 79 99 2 4 461 463 920 Cholamonas cyrtodiopsidis strain ATCC 50325 beta-tubulin (btub) gene, partial cds blastn 43755 398 1 Eukaryota Sar   Cercozoa     Sainouridae Cholamonas Cholamonas cyrtodiopsidis
11671321 11671321 PRJNA1078753_P_NODE_37410_length_245_cov_0.895349_g37214_i0 PRJNA1078753 37410 245 0.895349 2.19360505 Cercomonas sp. C59 372078 SAR_Eukaryotes SAR_Eukaryotes 267 7.249999999999999e-67   NTclustered gi|88792584|gb|DQ386165.1| 372078 g37214 i0 86.531 42.4285714285714 245 29 99 3 1 244 1993 2234 Cercomonas sp. C59 28S ribosomal RNA gene, partial sequence blastn 10395 267 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. C59
11671363 11671363 PRJNA1078753_P_NODE_4170_length_505_cov_1.067130_g3974_i0 PRJNA1078753 4170 505 1.06713 5.3890065 Thaumatomonas sp. TMT002 407209 SAR_Eukaryotes SAR_Eukaryotes 303 1.23e-77   NTclustered gi|193875699|gb|EU812202.1| 407209 g3974 i0 81.644 57.2 365 67 72 0 141 505 4 368 Thaumatomonas sp. TMT002 clone tshsp70-1 70 kDa heat shock protein mRNA, partial cds blastn 28886 303 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas sp. TMT002
12946179 12946179 PRJNA1078753_P_NODE_10231_length_352_cov_12.315412_g10035_i0 PRJNA1078753 10231 352 12.315412 43.35025024 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 231 3.9799999999999995e-56   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g10035 i0 90.805 57.5568181818182 174 14 49 2 1 172 3665 3838 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 20260 231 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
12946475 12946475 PRJNA1078753_P_NODE_7571_length_394_cov_3.392523_g7375_i0 PRJNA1078753 7571 394 3.392523 13.36654062 Thaumatomonas sp. TMT002 407209 SAR_Eukaryotes SAR_Eukaryotes 719 0   NTclustered gi|116222192|gb|DQ980477.1| 407209 g7375 i0 99.495 65.8248730964467 396 0 100 2 1 394 1907 2302 Thaumatomonas sp. TMT002 large subunit ribosomal RNA gene, partial sequence blastn 25935 719 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas sp. TMT002
15044662 15044662 PRJNA1078753_P_NODE_4172_length_504_cov_8.914153_g3976_i0 PRJNA1078753 4172 504 8.914153 44.92733112 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 800 0   NTclustered gi|319659368|gb|GU320605.1| 943207 g3976 i0 95.635 98.9523809523809 504 13 100 5 1 504 1808 1314 Reticulamoeba sp. COHH 9 18S ribosomal RNA gene, partial sequence blastn 49872 800 1 Eukaryota Sar   Cercozoa       Reticulamoeba Reticulamoeba sp. COHH 9
16769565 16769565 PRJNA1078753_P_NODE_3174_length_565_cov_2.386179_g2981_i0 PRJNA1078753 3174 565 2.386179 13.48191135 Cercomonas sp. ATCC 50316 45110 SAR_Eukaryotes SAR_Eukaryotes 305 3.87e-78   NTclustered gi|27734378|gb|AY099144.1| 45110 g2981 i0 91.781 108.869026548673 219 18 39 0 68 286 209 427 Cercomonas ATCC50316 isolate pub6 polyubiquitin gene, partial cds blastn 61511 305 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. ATCC 50316
18044241 18044241 PRJNA1078753_P_NODE_16675_length_294_cov_1.330317_g16479_i0 PRJNA1078753 16675 294 1.330317 3.91113198 Phytocercomonas venanatans 2065209 SAR_Eukaryotes SAR_Eukaryotes 353 6.68e-93   NTclustered gi|1315527746|gb|MF034898.1| 2065209 g16479 i0 88.699 99.2380952380952 292 29 99 3 3 292 1010 1299 Phytocercomonas venanatans actin gene, complete cds blastn 29176 353 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Phytocercomonas Phytocercomonas venanatans
19318192 19318192 PRJNA1078753_P_NODE_18076_length_286_cov_3.929577_g17880_i0 PRJNA1078753 18076 286 3.929577 11.23859022 Thaumatomonas sp. TMT002 407209 SAR_Eukaryotes SAR_Eukaryotes 512 1.01e-140   NTclustered gi|116222192|gb|DQ980477.1| 407209 g17880 i0 98.951 60.7167832167832 286 3 100 0 1 286 2887 2602 Thaumatomonas sp. TMT002 large subunit ribosomal RNA gene, partial sequence blastn 17365 512 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas sp. TMT002
20593592 20593592 PRJNA1078753_P_NODE_2557_length_622_cov_2.701275_g2366_i0 PRJNA1078753 2557 622 2.701275 16.8019305 Cercomonas sp. HFCC53 458867 SAR_Eukaryotes SAR_Eukaryotes 1144 0   NTclustered gi|161015705|gb|EF681939.1| 458867 g2366 i0 99.839 57.4823151125402 622 1 100 0 1 622 204 825 Cercomonas sp. HFCC53 28S ribosomal RNA gene, partial sequence blastn 35754 1144 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. HFCC53
20593740 20593740 PRJNA1078753_P_NODE_5977_length_435_cov_1.795580_g5781_i0 PRJNA1078753 5977 435 1.79558 7.810773 Thaumatomastix sp. NIES-2378 717846 SAR_Eukaryotes SAR_Eukaryotes 327 6.23e-85   NTclustered gi|302563030|dbj|AB546338.1| 717846 g5781 i0 81.39 0.926436781609195 403 65 91 8 38 435 1131 734 Thaumatomastix sp. NIES-2378 EFL mRNA for elongation factor like, partial cds blastn 403 327 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomastix Thaumatomastix sp. NIES-2378

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;