RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1078753 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14221441 14221441 PRJNA1078753_P_NODE_6492_length_420_cov_2.734870_g6296_i0 PRJNA1078753 6492 420 2.73487 11.486454 Asterionella formosa 210441 SAR_Eukaryotes SAR_Eukaryotes 152 3.88e-32   NTclustered gi|1111668563|ref|NC_032029.1| 210441 g6296 i0 86.207 29.6357142857143 145 14 34 6 230 370 30122 29980 Asterionella formosa strain BGM1 mitochondrion, complete genome blastn 12447 152 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Asterionella Asterionella formosa
18044294 18044294 PRJNA1078753_P_NODE_24955_length_258_cov_3.535135_g24759_i0 PRJNA1078753 24955 258 3.535135 9.1206483 Pseudo-nitzschia multiseries 37319 SAR_Eukaryotes SAR_Eukaryotes 106 1.78e-18   NTclustered gi|2846854613|gb|PQ459336.1| 37319 g24759 i0 84.762 11.6899224806202 105 16 41 0 48 152 18969 19073 Pseudo-nitzschia multiseries isolate CNS00149 mitochondrion, complete genome blastn 3016 106 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multiseries
23144666 23144666 PRJNA1078753_P_NODE_1259_length_851_cov_3.848329_g1104_i0 PRJNA1078753 1259 851 3.848329 32.74927979 Guinardia delicatula 1244696 SAR_Eukaryotes SAR_Eukaryotes 318 7.649999999999999e-82   NTclustered gi|2074156200|gb|MW413905.1| 216802 g1104 i0 75.099 75.8625146886016 759 149 87 30 96 832 24602 23862 Guinardia delicatula mitochondrion, complete genome blastn 64559 318 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia delicatula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;