RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1078753 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
192416 192416 PRJNA1078753_P_NODE_13441_length_319_cov_1.873984_g13245_i0 PRJNA1078753 13441 319 1.873984 5.97800896 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 551 2.4199999999999995e-152   NTclustered gi|157142627|gb|EU122898.1| 171953 g13245 i0 97.806 100.658307210031 319 7 100 0 1 319 325 7 Uncultured Acidobacteria bacterium clone REF-073 16S ribosomal RNA gene, partial sequence blastn 32110 551 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
12495829 12495829 PRJNA1078753_P_NODE_730_length_1074_cov_2.004995_g600_i0 PRJNA1078753 730 1074 2.004995 21.5336463 Terriglobus 392733 Bacteria Bacteria 1230 0   NTclustered gi|76574293|gb|DQ139441.1| 171953 g600 i0 88.088 102.867783985102 1041 118 97 6 37 1074 1497 460 Uncultured Acidobacteria bacterium clone CAL1 23S ribosomal RNA gene, partial sequence blastn 110480 1240 0.991935483870968 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;