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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 12 ✖

bioproject 1

  • PRJNA1078753 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1467293 1467293 PRJNA1078753_P_NODE_7762_length_390_cov_3.176656_g7566_i0 PRJNA1078753 7762 390 3.176656 12.3889584 Monoraphidium neglectum 145388 Plants Plants 228 5.769999999999999e-55   NTclustered gi|926781757|ref|XM_014043899.1| 145388 g7566 i0 84.1 18.5410256410256 239 35 61 3 1 236 161 399 Monoraphidium neglectum 60S ribosomal protein mRNA blastn 7231 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
4845067 4845067 PRJNA1078753_P_NODE_38964_length_244_cov_0.900585_g38768_i0 PRJNA1078753 38964 244 0.900585 2.1974274 Eukaryota 2759 Plants Plants 134 7.640000000000001e-27   NTclustered gi|66864300|gb|DQ015755.1| 52964 g38768 i0 91.667 988.627049180328 96 8 39 0 1 96 2606 2511 Dysmorphococcus globosus strain UTEX LB 65 26S ribosomal RNA gene, partial sequence blastn 241225 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Phacotaceae Dysmorphococcus Dysmorphococcus globosus
6570586 6570586 PRJNA1078753_P_NODE_41486_length_242_cov_0.911243_g41290_i0 PRJNA1078753 41486 242 0.911243 2.20520806 Auxenochlorella protothecoides 3075 Plants Plants 56.5 0.002   NTclustered gi|760448672|ref|XM_011403103.1| 3075 g41290 i0 100 0.12396694214876 30 0 12 0 204 233 1089 1118 Auxenochlorella protothecoides Ribonuclease H2 subunit A partial mRNA blastn 30 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
7845107 7845107 PRJNA1078753_P_NODE_11547_length_337_cov_4.920455_g11351_i0 PRJNA1078753 11547 337 4.920455 16.58193335 Volvox carteri 3067 Plants Plants 178 5.0299999999999986e-40   NTclustered gi|302830857|ref|XM_002946949.1| 3068 g11351 i0 82.126 56.6854599406528 207 37 61 0 22 228 303 97 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl36A), mRNA blastn 19103 178 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
12946183 12946183 PRJNA1078753_P_NODE_10571_length_348_cov_4.581818_g10375_i0 PRJNA1078753 10571 348 4.581818 15.94472664 Chlamydomonas reinhardtii 3055 Plants Plants 95.3 5.4e-15   NTclustered gi|2082253493|ref|XM_043066154.1| 3055 g10375 i0 82.857 0.301724137931034 105 18 30 0 90 194 652 756 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_09g405106v5), mRNA blastn 105 95.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14221192 14221192 PRJNA1078753_P_NODE_16932_length_292_cov_1.406393_g16736_i0 PRJNA1078753 16932 292 1.406393 4.10666756 Chlamydomonas reinhardtii 3055 Plants Plants 171 7.159999999999999e-38   NTclustered gi|2082238813|ref|XM_001701728.2| 3055 g16736 i0 79.134 5.57534246575342 254 47 86 5 28 278 228 478 Chlamydomonas reinhardtii ribosomal protein L15 (CHLRE_02g091100v5), mRNA blastn 1628 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15495114 15495114 PRJNA1078753_P_NODE_18393_length_285_cov_1.452830_g18197_i0 PRJNA1078753 18393 285 1.45283 4.1405655 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.002   NTclustered gi|2082249394|ref|XM_001691323.2| 3055 g18197 i0 89.362 0.164912280701754 47 2 15 1 133 176 187 141 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g306850v5), mRNA blastn 47 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15495140 15495140 PRJNA1078753_P_NODE_20853_length_275_cov_1.198020_g20657_i0 PRJNA1078753 20853 275 1.19802 3.294555 Chlamydomonas reinhardtii 3055 Plants Plants 191 5.13e-44   NTclustered gi|2082245036|ref|XM_001692150.2| 3055 g20657 i0 80.4 24.5345454545455 250 49 91 0 11 260 1036 787 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_04g223850v5), mRNA blastn 6747 191 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
16769496 16769496 PRJNA1078753_P_NODE_23714_length_264_cov_0.827225_g23518_i0 PRJNA1078753 23714 264 0.827225 2.183874 Volvox carteri 3067 Plants Plants 202 2.26e-47   NTclustered gi|302851190|ref|XM_002957074.1| 3068 g23518 i0 82.083 35.3712121212121 240 39 90 4 25 262 519 282 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 40S small subunit (rps14), mRNA blastn 9338 202 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
18044299 18044299 PRJNA1078753_P_NODE_2515_length_627_cov_1.922383_g2324_i0 PRJNA1078753 2515 627 1.922383 12.05334141 Chaetomorpha valida 1213231 Plants Plants 457 1.13e-123   NTclustered gi|672391792|gb|KF812520.1| 1213231 g2324 i0 80 99.5087719298246 630 117 100 8 1 627 773 1396 Chaetomorpha valida heat shock protein 70 (hsp70) mRNA, complete cds blastn 62392 457 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Cladophoraceae Chaetomorpha Chaetomorpha valida
24418609 24418609 PRJNA1078753_P_NODE_6360_length_424_cov_2.800570_g6164_i0 PRJNA1078753 6360 424 2.80057 11.8744168 Chlamydomonas reinhardtii 3055 Plants Plants 200 1.38e-46   NTclustered gi|2082260551|ref|XM_001702928.2| 3055 g6164 i0 79.054 17.6816037735849 296 58 69 4 2 295 452 159 Chlamydomonas reinhardtii ribosomal protein S11 (CHLRE_12g514500v5), mRNA blastn 7497 200 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24418619 24418619 PRJNA1078753_P_NODE_7440_length_397_cov_2.783951_g7244_i0 PRJNA1078753 7440 397 2.783951 11.05228547 Chlorella variabilis 554065 Plants Plants 171 1.01e-37   NTclustered gi|552825916|ref|XM_005846855.1| 554065 g7244 i0 86.164 16.9017632241814 159 20 40 2 157 314 234 77 Chlorella variabilis hypothetical protein (CHLNCDRAFT_134811) mRNA, complete cds blastn 6710 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;