RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA1078753 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2292158 2292158 PRJNA1078753_P_NODE_17142_length_291_cov_1.036697_g16946_i0 PRJNA1078753 17142 291 1.036697 3.01678827 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 315 3.11e-81   NTclustered gi|316926521|gb|GU479949.1| 315785 g16946 i0 86.78 45.4364261168385 295 23 99 14 2 291 1022 739 Uncultured centroheliozoan clone PR1_4E_11 18S ribosomal RNA gene, partial sequence blastn 13222 315 1 Eukaryota Haptista     Centroplasthelida       uncultured Centroheliozoa
15495242 15495242 PRJNA1078753_P_NODE_34553_length_246_cov_1.780347_g34357_i0 PRJNA1078753 34553 246 1.780347 4.37965362 Raphidocystis contractilis 2792838 Root_unresolved Root_unresolved 154 5.9200000000000005e-33   NTclustered gi|259475522|emb|FN392330.1| 2792838 g34357 i0 88.8 17.5731707317073 125 14 51 0 1 125 277 153 Raphidiophrys contractilis partial mRNA for ADP-ribosylation factor 3, contig F5 blastn 4323 154 1 Eukaryota Haptista     Centroplasthelida Acanthocystida Raphidocystidae Raphidocystis Raphidocystis contractilis
21869491 21869491 PRJNA1078753_P_NODE_4838_length_476_cov_2.062035_g4642_i0 PRJNA1078753 4838 476 2.062035 9.8152866 Heterophrys marina 256678 Root_unresolved Root_unresolved 285 4.2e-72   NTclustered gi|375582578|gb|JQ245082.1| 256678 g4642 i0 79.302 61.5168067226891 401 79 84 4 64 462 19 417 Heterophrys marina elongation factor-like protein gene, partial cds blastn 29282 285 1 Eukaryota Haptista     Centroplasthelida Pterocystida Heterophryidae Heterophrys Heterophrys marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;