RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1078753 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14221448 14221448 PRJNA1078753_P_NODE_7012_length_407_cov_1.383234_g6816_i0 PRJNA1078753 7012 407 1.383234 5.62976238 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 62.1 6.49e-5   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g6816 i0 95 0.176904176904177 40 0 10 2 217 255 720711 720749 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 72 62.1 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
16769681 16769681 PRJNA1078753_P_NODE_5534_length_450_cov_19.387268_g5338_i0 PRJNA1078753 5534 450 19.387268 87.242706 uncultured Candidatus Saccharibacteria bacterium 179883 Bacteria Bacteria 671 0   NTclustered gi|2874253997|emb|OY970322.1| 179883 g5338 i0 93.75 111.013333333333 448 26 99 2 4 450 419285 418839 MAG: uncultured Candidatus Saccharibacteria bacterium isolate MFD05512.bin.c.2 genome assembly, chromosome: 1 blastn 49956 671 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         uncultured Candidatus Saccharibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;