RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1078753" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA1078753 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7845305 7845305 PRJNA1078753_P_NODE_38787_length_244_cov_0.900585_g38591_i0 PRJNA1078753 38787 244 0.900585 2.1974274 Thecamonas trahens 529818 Root_unresolved Root_unresolved 274 4.31e-69   NTclustered gi|923133140|ref|XM_013904582.1| 461836 g38591 i0 87.66 31.5245901639344 235 29 96 0 10 244 240 6 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_03185), partial mRNA blastn 7692 274 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
18044221 18044221 PRJNA1078753_P_NODE_14635_length_309_cov_2.237288_g14439_i0 PRJNA1078753 14635 309 2.237288 6.91321992 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 292 1.5599999999999999e-74   NTclustered gi|116222168|gb|DQ980460.1| 41120 g14439 i0 84.983 87.5307443365696 293 38 94 6 20 309 685 974 Apusomonas proboscidea clone aphsp90 Hsp90 mRNA, partial cds blastn 27047 292 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
20593530 20593530 PRJNA1078753_P_NODE_17137_length_291_cov_1.059633_g16941_i0 PRJNA1078753 17137 291 1.059633 3.08353203 Thecamonas trahens 529818 Root_unresolved Root_unresolved 198 3.27e-46   NTclustered gi|923135134|ref|XM_013905579.1| 461836 g16941 i0 85.34 34.5910652920962 191 28 66 0 25 215 10 200 Thecamonas trahens ATCC 50062 60S ribosomal protein L27a (AMSG_02000), mRNA blastn 10066 198 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
23144801 23144801 PRJNA1078753_P_NODE_32959_length_247_cov_1.770115_g32763_i0 PRJNA1078753 32959 247 1.770115 4.37218405 Thecamonas trahens 529818 Root_unresolved Root_unresolved 163 9.88e-36   NTclustered gi|923119705|ref|XM_013897872.1| 461836 g32763 i0 80 4.91497975708502 225 41 90 4 25 247 173 395 Thecamonas trahens ATCC 50062 Ras-like C3 botulinum toxin substrate 1 (AMSG_10606), mRNA blastn 1214 163 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;